View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6170_low_3 (Length: 545)
Name: NF6170_low_3
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6170_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 45467148 - 45466614
Alignment:
| Q |
1 |
aaaaatcaaaaatatcagtcctagtaatagcagcagcaatatcatttttctgaagagttcgtcgtttattctcttcagcatgaagccaagaacgaatggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45467148 |
aaaaatcaaaaatatcagtcctagtaatagcagcagcaatatcatttttctgaagagttcgtcgtttattctcttcagcatgaagccaagaacgaatggt |
45467049 |
T |
|
| Q |
101 |
gagttcaagaatgaaaagctcacaagctttagcaaagagaattggtgcttctgcagaaatcatgcgaacgtcttcatcagctttcatgattttcttaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45467048 |
gagttcaagaatgaaaagctcacaagctttagcaaagagaattggtgcttctgcagaaatcatgcgaacgtcttcatcagctttcatgattttcttaatg |
45466949 |
T |
|
| Q |
201 |
cgtgctaatggaagttgatggtttttgaaatcattgacgtgttcgatttcttgacgttggtaggaccagaacatttgaagcnnnnnnnnnnnnnnnnnga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45466948 |
cgtgctaatggaagttgatggtttttgaagtcattgacgtgttcgatttcttgacgttggtaggaccagaacatttgaagctgttgttgttgttgttgga |
45466849 |
T |
|
| Q |
301 |
gaagatgttggaatggtggtggtgtaactgccgtgggtgaaggtgttggatannnnnnnnnnnnnnnnnnnnnctccatgaatgatgaatgatgatgat- |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45466848 |
gaagatgttggaatggtggtggtgtaactgccgtgggtgaaggtgttggatattgttgttgttggttgttgttctccatgaatgatgaatgatgatgatg |
45466749 |
T |
|
| Q |
400 |
--------agtaacaattggtggctgttgattttgatggaattgtgaattcaatggaaggaaatcatttttggatgattggataaggtagggcctaaggc |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45466748 |
ttttcaggagtaacaattggtggctgttgattttgatggaattgtgaattcaatggaaggaaatcatttttggatgattggataaggtagggcctagggc |
45466649 |
T |
|
| Q |
492 |
atgggacttcttttctttcttgcccaattgtaaaag |
527 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||| |
|
|
| T |
45466648 |
atgggacttcttttctttctt-cgcaattgtaaaag |
45466614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 46851634 - 46851686
Alignment:
| Q |
3 |
aaatcaaaaatatcagtcctagtaatagcagcagcaatatcatttttctgaag |
55 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
46851634 |
aaatcaaagatatcagtcctagtgattgcagcagcaatatcattcttctgaag |
46851686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University