View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6170_low_4 (Length: 528)
Name: NF6170_low_4
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6170_low_4 |
 | |
|
| [»] scaffold0152 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0152 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 3 - 509
Target Start/End: Complemental strand, 13129 - 12621
Alignment:
| Q |
3 |
tgacaatctaggtatgtaaaccttctctccaatgttgtcaccggttatgcaaccacgtaaaaaccgcatattagttgtaagtgtcaaaacttcacaatga |
102 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| | |
|
|
| T |
13129 |
tgacaatctatgtatgtaaaccttctctccaatgttgtcaccggttatgcagccacgtaaaagccgcatattagttgcaagtgtcaaaacttcacaataa |
13030 |
T |
|
| Q |
103 |
ttccacaacgatgaagaatttattggtgcaagaactatttcttgccttgttccttttgggataataactggtaggatttttcagaaatcatcatcaagaa |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
13029 |
ttccacaacgatgaagaattcattggtgcaagaactatttcttgccttgttccttttgggataa---ctggtaggatttttcaaaaatcatcatcaagaa |
12933 |
T |
|
| Q |
203 |
ttagcttagtttcataaaaagcattagcacgttaaacaatttaaagatgtttcttttgaatttggttattttcatcatacgcacataaataataaactgt |
302 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932 |
ttagcttagtttcgtaaaaagcattagcacgttaaacaatttaaagatgtttcttttgaatttggttattttcatcatacgcacataaataataaactgt |
12833 |
T |
|
| Q |
303 |
gtcaacactccaaagtaacgtcaataaggttgcnnnnnnngccattaacctctttgattttcaagacctccctctcaacaacgtgtcttataacatctgg |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
12832 |
gtcaacactccaaagtaacgtcaataaggttgcttcttttgccattaacctctttgattttcaaggcatccctctcaacaacgtgtcttataacatctgg |
12733 |
T |
|
| Q |
403 |
aaataataatgag-------gattttatttggataaagattatacaattctcaacatctcagaagttaatacatcatacacggtgctcaaagagagtgca |
495 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12732 |
aaataataatgaggattagtgattttatttggataaagattatacaattctcaaca--tcagaagttaatacatcatacacagtgctcaaagagagtgca |
12635 |
T |
|
| Q |
496 |
gtaaaccaaggtat |
509 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12634 |
gtaaaccaaggtat |
12621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University