View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6170_low_5 (Length: 470)

Name: NF6170_low_5
Description: NF6170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6170_low_5
NF6170_low_5
[»] chr5 (9 HSPs)
chr5 (12-171)||(9617526-9617684)
chr5 (289-455)||(9617368-9617532)
chr5 (365-455)||(17391601-17391691)
chr5 (365-455)||(17382825-17382914)
chr5 (368-455)||(1348782-1348869)
chr5 (367-455)||(19970551-19970639)
chr5 (376-455)||(20110869-20110948)
chr5 (365-455)||(17376447-17376537)
chr5 (410-451)||(20049107-20049148)
[»] chr3 (1 HSPs)
chr3 (369-448)||(32243151-32243230)
[»] chr6 (3 HSPs)
chr6 (369-447)||(16259556-16259634)
chr6 (369-447)||(16229247-16229325)
chr6 (365-450)||(31114506-31114591)
[»] scaffold0009 (2 HSPs)
scaffold0009 (401-449)||(21471-21519)
scaffold0009 (388-451)||(39743-39806)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 9e-71; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 9617684 - 9617526
Alignment:
Q  12 tcatcagatccagggtcttaagtaaaggaagatgaacagagcaatgagtcatagtggctacacgtaaactccacaaatggagaatcacaagtgtttcgca 111  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9617684 tcatcatatccagggtcttaagtaaaggaagatgaacagaacaatgagtcatagtggctacacgtaaactcca-aaatggagaatcacaagtgtttcgca 9617586  T
Q  112 ggaggagaaaatggtaggcggcaaaggggggaagcctaatactaacgttagacggagatc 171  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  9617585 ggaggagaaaatggtaggcggcaaaggggagaagcctaatactaacgctagacggagatc 9617526  T

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Target: chr5; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 289 - 455
Target Start/End: Complemental strand, 9617532 - 9617368
Alignment:
Q  289 ggagatcatgactgcgttgattaatcggtagaagtcgtctgcgttctccacatcggcatcttggaagtcgagaactgagagtgagtggcataatgggacc 388  Q
    ||||||||||||||||||||||||||| |||||||| | ||  ||||| ||||||  |   ||||||||||||||| ||||||||||| |||||||||||    
T  9617532 ggagatcatgactgcgttgattaatcgatagaagtcatgtg--ttctcgacatcgttactgtggaagtcgagaacttagagtgagtgggataatgggacc 9617435  T
Q  389 caccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 455  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9617434 caccttttcgagagaacgatagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 9617368  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 365 - 455
Target Start/End: Complemental strand, 17391691 - 17391601
Alignment:
Q  365 gagagtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 455  Q
    ||||||||||||||||||| |||||| |||||||| |||||||| ||||| ||||||| ||||  ||| || |||||||||||||||||||    
T  17391691 gagagtgagtggcataatgagacccatcttttcgaaagaacggtggttctaaaagcgtctttgcatggaagcaaagagagaatgtgagtta 17391601  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 455
Target Start/End: Complemental strand, 17382914 - 17382825
Alignment:
Q  365 gagagtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 455  Q
    ||||||||||||||||||| |||||| |||||||| |||||  | ||||| ||||||| ||||  ||| ||||||||||||||||||||||    
T  17382914 gagagtgagtggcataatgagacccatcttttcgaaagaac-atggttctaaaagcgtgtttgcatggaagaaaagagagaatgtgagtta 17382825  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 455
Target Start/End: Original strand, 1348782 - 1348869
Alignment:
Q  368 agtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 455  Q
    |||| |||| ||||||||| ||| || || || |||| ||||||||||||||||| ||||| || ||||||||||| |||||||||||    
T  1348782 agtgtgtggaataatgggaaccatctcttagaaagaatggtagttctgaaagcgtctttgaatgtgagaaaagagataatgtgagtta 1348869  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 455
Target Start/End: Original strand, 19970551 - 19970639
Alignment:
Q  367 gagtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 455  Q
    |||||||| ||| |||| ||||||| | || || || ||||| ||||||||||||| | ||| ||| ||||||||||||||||||||||    
T  19970551 gagtgagtagcacaatgagacccacgtcttggaaagcacggtggttctgaaagcgtctctgattggaagaaaagagagaatgtgagtta 19970639  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 455
Target Start/End: Complemental strand, 20110948 - 20110869
Alignment:
Q  376 gcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 455  Q
    |||||||| ||||||  | || ||||||||||| ||| ||||||||| ||||| ||| ||||||||||  ||||||||||    
T  20110948 gcataatgagacccatttctttgagagaacggtggttttgaaagcgtctttgaatggaagaaaagagacgatgtgagtta 20110869  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 455
Target Start/End: Complemental strand, 17376537 - 17376447
Alignment:
Q  365 gagagtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtgagtta 455  Q
    ||||||||||||||||||| || ||| |||||||| ||||| |||  ||| ||||||| |||   ||| || ||||||||||| |||||||    
T  17376537 gagagtgagtggcataatgagatccatcttttcgaaagaactgtaaatctaaaagcgtctttacatggaagtaaagagagaatatgagtta 17376447  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 451
Target Start/End: Complemental strand, 20049148 - 20049107
Alignment:
Q  410 gttctgaaagcgtatttgagtgggagaaaagagagaatgtga 451  Q
    ||||||||| |||||||||  |||||||||||||||||||||    
T  20049148 gttctgaaaacgtatttgatagggagaaaagagagaatgtga 20049107  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 448
Target Start/End: Original strand, 32243151 - 32243230
Alignment:
Q  369 gtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatg 448  Q
    ||||||||| ||||||||||||||| ||||| |||| ||||||||||||||||| ||||| ||| |||||| ||||||||    
T  32243151 gtgagtggcgtaatgggacccacctcttcgaaagaatggtagttctgaaagcgtctttgactggaagaaaaaagagaatg 32243230  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 447
Target Start/End: Original strand, 16259556 - 16259634
Alignment:
Q  369 gtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaat 447  Q
    ||||||| ||||||| ||||||||| ||||| |||| ||||||||||||||||| ||||| ||| ||||||||||||||    
T  16259556 gtgagtgacataatgagacccacctcttcgaaagaatggtagttctgaaagcgtctttgattggaagaaaagagagaat 16259634  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 447
Target Start/End: Original strand, 16229247 - 16229325
Alignment:
Q  369 gtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaat 447  Q
    ||||||| ||||||| ||||||||| ||||| |||| ||||||||||||||| | ||||| ||| ||||||||||||||    
T  16229247 gtgagtgacataatgagacccacctcttcgaaagaatggtagttctgaaagcctctttgattggaagaaaagagagaat 16229325  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 450
Target Start/End: Complemental strand, 31114591 - 31114506
Alignment:
Q  365 gagagtgagtggcataatgggacccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtg 450  Q
    |||||||||||||||||||||||||| || || || || ||  | ||||| ||||| ||||||| |||||||||||| ||||||||    
T  31114591 gagagtgagtggcataatgggacccaactcttagaaaggacattggttctaaaagcttatttgattgggagaaaagacagaatgtg 31114506  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 449
Target Start/End: Complemental strand, 21519 - 21471
Alignment:
Q  401 agaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgt 449  Q
    |||||||||||||||||||| |||||||  || ||||||||||||||||    
T  21519 agaacggtagttctgaaagcatatttgatcggaagaaaagagagaatgt 21471  T

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Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 451
Target Start/End: Complemental strand, 39806 - 39743
Alignment:
Q  388 ccaccttttcgagagaacggtagttctgaaagcgtatttgagtgggagaaaagagagaatgtga 451  Q
    |||||| || || |||| |||||||||||||||||||||||  || ||||||||||| ||||||    
T  39806 ccacctcttggaaagaatggtagttctgaaagcgtatttgatcggaagaaaagagagtatgtga 39743  T

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