View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6171_low_1 (Length: 420)
Name: NF6171_low_1
Description: NF6171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6171_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 414
Target Start/End: Original strand, 37571425 - 37571828
Alignment:
| Q |
11 |
acatcatcaaagcagacgggaggactaaaaaattcattaaatatataataaagggactaaaaagttggttttaaaactagggggctataacttctcaaag |
110 |
Q |
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| T |
37571425 |
acatcaccaaaacagacaggaggactaaaaaatccattaaatatataatagagggactaaaaagttggttttaaaactagggggctaaaacttctcaaag |
37571524 |
T |
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| Q |
111 |
taaaatagaaggatcaaaactatatttaagtttaaaattaaatttcgaaagttccactcataggatcatcttcatttgctaaaaaatgagttcaaggcaa |
210 |
Q |
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| T |
37571525 |
taaaataggaggatcaaaactacatttaagtttaaaat-aaatttcgacagttctactcataggatcatcttgatttgctaaaaaatgagttcaaggcaa |
37571623 |
T |
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| Q |
211 |
aacaatttaaaataattaaacttgtataatatgaaatttaatagaataattttcatgat--acacaaatatagaagggaaaataatcattttacaatgtg |
308 |
Q |
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| T |
37571624 |
aacaatttaaaataattaaacttgtataatatgaaatttaatagaataatcttcatgatacacacaaatatagaagggaaaataatcattttacaatatg |
37571723 |
T |
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| Q |
309 |
gagaccagaattacgattttatttttatgttaacccttcaaaccttcaatttttaaaaattgaaatctttgtattttggagttcgaccatgagataagta |
408 |
Q |
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|||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37571724 |
gagatcaaaattacgatttta-ttttatgttaacccttcaaaccttcaatttttaaaaattgaaatctttgtatcttggagttcgaccatgagataagta |
37571822 |
T |
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| Q |
409 |
taatct |
414 |
Q |
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| T |
37571823 |
taatct |
37571828 |
T |
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