View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6171_low_2 (Length: 364)
Name: NF6171_low_2
Description: NF6171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6171_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 47884495 - 47884834
Alignment:
| Q |
18 |
agatttaagggaaaacaacatgtggttaaggttagagcaacagtggaagtgggtggtgtggaggatttnnnnnnnngaagaagcaatgttgcattggagg |
117 |
Q |
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| T |
47884495 |
agatttaagggaaaacaacatgttgttaaggttagagcaacagtggaagtgggtggtgtggaggatttaaaaaaaagaagaagcaatgttgcattggagg |
47884594 |
T |
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| Q |
118 |
gaaatttaggtttggatatggtttcagaaggagagttaatggtgaagggttttagagggttgaggaagacaaagcttgtgtgtactgttggtcctgcttg |
217 |
Q |
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| T |
47884595 |
gaaatttgggtttggatatggtttcagaaggagagttaatggtgaagggttttagagggttgaggaagacaaagcttgtgtgtactgttggtcctgcttg |
47884694 |
T |
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| Q |
218 |
tagttcattggaggatctagagaagttggcattgggaggaatgaatgttgctaggcttaatatgtgtcatggtactagagaatggcaccgtgatgttatt |
317 |
Q |
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| T |
47884695 |
tagttcattggaggatctagagaagttggcattgggaggaatgaatgttgctaggcttaatatgtgtcatggtactagagaatggcaccgtgatgttatt |
47884794 |
T |
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| Q |
318 |
aggaagattaagaagcttaatgaggaaaagggtttctctg |
357 |
Q |
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| T |
47884795 |
aggaagattaagaagcttaatgaggaaaagggtttctctg |
47884834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 47880758 - 47880846
Alignment:
| Q |
95 |
aagaagcaatgttgcattggagggaaatttaggtttggatatggtttcagaaggagagttaatggtgaagggttttagagggttgaggaaga |
186 |
Q |
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| T |
47880758 |
aagaagcaatgttgcattgtagggaactttggggttggatatggtttc---aggagagttaatggtgaagggtttttgaaggttgaggaaga |
47880846 |
T |
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