View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6171_low_3 (Length: 225)
Name: NF6171_low_3
Description: NF6171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6171_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 1694991 - 1695186
Alignment:
| Q |
15 |
cacagaacaatcaatagtgacccaaatggatcatgccaatgcatattctttcccatactttgattgttggagtaactctacatcaacattatttaccgaa |
114 |
Q |
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| T |
1694991 |
cacagaacaatcaatagtgacccaaatggatcatgccaatgcatattctttcccatactttgattgttggagtaactctacatcaacattatttaccgaa |
1695090 |
T |
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| Q |
115 |
aagagtaaagaatgtgaacctatagttgagatgcctgcatcacctgaacttgaaagcacagaattgattgatgatgaaaagatgtattatgattat |
210 |
Q |
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| T |
1695091 |
aagagtaaagaatgtgaacctatagttgagatgcctgcatcacctgaacttgaaagcacagaattgattgatgatgaaaagatgtattatgattat |
1695186 |
T |
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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 162
Target Start/End: Original strand, 41920974 - 41921073
Alignment:
| Q |
63 |
tttcccatactttgattgttggagtaactctacatcaacattatttaccgaaaagagtaaagaatgtgaacctatagttgagatgcctgcatcacctgaa |
162 |
Q |
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| T |
41920974 |
tttcccatactctgattattggagcaattctacatcaacattatttactaaagaaagtaaagaatgtgaacctatagttgagatgcccgcatcacctgaa |
41921073 |
T |
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