View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6171_low_4 (Length: 219)
Name: NF6171_low_4
Description: NF6171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6171_low_4 |
 | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 47096107 - 47095917
Alignment:
| Q |
17 |
cttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47096107 |
cttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagata |
47096008 |
T |
|
| Q |
117 |
atctccgaaaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47096007 |
atctccgaaaaattcccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
47095917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 53137363 - 53137552
Alignment:
| Q |
18 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataa |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
53137363 |
ttgttggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagatga |
53137462 |
T |
|
| Q |
118 |
tctccgaaaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53137463 |
tctccgaaaaattcccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
53137552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 30892507 - 30892696
Alignment:
| Q |
18 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataa |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
30892507 |
ttgtgggactgcaggatagtcacacggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttgtctagaaagccacaaataa |
30892606 |
T |
|
| Q |
118 |
tctccgaaaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30892607 |
tctccgaaaaattcccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
30892696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 21180082 - 21180263
Alignment:
| Q |
25 |
actgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataatctccga |
124 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
21180082 |
actgcaggatagtcacgtgacaatcctgataaaattcttgcacatgcttgccttggatttgacaataatacttctctagaaagccacaaatgatctccga |
21180181 |
T |
|
| Q |
125 |
aaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21180182 |
aaaatt-ccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
21180263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 39506110 - 39505932
Alignment:
| Q |
29 |
caggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataatctccgaaaaa |
128 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39506110 |
caggatagtcacgcgacaatcctgggaaaattcttgcacatgcttaccttggatttgacaataatacttctctagaaagccacagatgatctccgaaaaa |
39506011 |
T |
|
| Q |
129 |
tttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39506010 |
ttctcaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaatcgatga |
39505932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 51798678 - 51798496
Alignment:
| Q |
25 |
actgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataatctccga |
124 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51798678 |
actgcaggatagtcacgcgacaatcctagtaaaattcttgcacatggctgccttgggtttgataataatacttctctagaaagccacagatgatctccga |
51798579 |
T |
|
| Q |
125 |
aaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51798578 |
aaaattcccaatatcatgcaaaatattgacgatttggataaacctcatggttataccgaacaccgtgaagtgctaattgatga |
51798496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 56275 - 56464
Alignment:
| Q |
18 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56275 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataa |
56374 |
T |
|
| Q |
118 |
tctccgaaaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56375 |
tctccgaaaaattcccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
56464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 48345222 - 48345411
Alignment:
| Q |
18 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48345222 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataa |
48345321 |
T |
|
| Q |
118 |
tctccgaaaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48345322 |
tctccgaaaaattcccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
48345411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 49912615 - 49912797
Alignment:
| Q |
25 |
actgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataatctccga |
124 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49912615 |
actgcatgatagtcacgcgacaatcctggtaaaattcttacacatgcttgccttggatttgacaataatacttctctagaaagccacagatgatctccga |
49912714 |
T |
|
| Q |
125 |
aaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
49912715 |
aaaatttccaataccatgcaaaatattgacgatttggataaacctcgtggttgtaccaaacgccgtgaagtgctaattgatga |
49912797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 20880595 - 20880405
Alignment:
| Q |
17 |
cttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20880595 |
cttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagata |
20880496 |
T |
|
| Q |
117 |
atctccgaaaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20880495 |
atctccgaaaaattcccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaaagccgtgaagtgctaattgatga |
20880405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 5626352 - 5626541
Alignment:
| Q |
18 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5626352 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttgtctagaaagccacagataa |
5626451 |
T |
|
| Q |
118 |
tctccgaaaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5626452 |
tctccgaaaaattcccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
5626541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 25083847 - 25083658
Alignment:
| Q |
18 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataa |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25083847 |
ttgtgggactgcaggatagtcacgcggaaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataa |
25083748 |
T |
|
| Q |
118 |
tctccgaaaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25083747 |
tctccgaaaaattcccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
25083658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 25141817 - 25141628
Alignment:
| Q |
18 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataa |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25141817 |
ttgtgggactgcaggatagtcacgcggaaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataa |
25141718 |
T |
|
| Q |
118 |
tctccgaaaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25141717 |
tctccgaaaaattcccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
25141628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 25061434 - 25061245
Alignment:
| Q |
18 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25061434 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgtttgccttgggtttgacaataatacttctctagaaagccacagataa |
25061335 |
T |
|
| Q |
118 |
tctccgaaaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25061334 |
tctccgaaaaattcccaataccatgcaaaatattgacgatgtggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
25061245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 42830206 - 42830017
Alignment:
| Q |
18 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42830206 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcatatgcttgccttgtgtttgacaataatacttctctagaaagccacagataa |
42830107 |
T |
|
| Q |
118 |
tctccgaaaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42830106 |
tctccgaaaaattcccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
42830017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 27820625 - 27820814
Alignment:
| Q |
18 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27820625 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatacacatgcttgccttgggtttgacaataatactgttctagaaagccacagataa |
27820724 |
T |
|
| Q |
118 |
tctccgaaaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27820725 |
tctccgaaaaattcccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
27820814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 2496267 - 2496090
Alignment:
| Q |
30 |
aggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataatctccgaaaaat |
129 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
2496267 |
aggatagtcacgcgacaatcctggtaaaattcttgcacatgcttgccttgggtttgtcaataatacttctctagaaagccatagatgatctccgaaaaat |
2496168 |
T |
|
| Q |
130 |
ttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
2496167 |
tcccaataccatgcaaaatattgacgattgggataaacctcatggttataccgaacgcagtgaaatgcaaattgatga |
2496090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 28472125 - 28471966
Alignment:
| Q |
26 |
ctgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataatctccgaa |
125 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||||| ||||||||||||||||||| || ||||||| |||||||||||||||||| || ||||||||| |
|
|
| T |
28472125 |
ctgcatgatagtcacgcgacaatcttggtaaaattcttgcacatgcttgccttggggttttcaataattcttctctagaaagccacaaatgatctccgaa |
28472026 |
T |
|
| Q |
126 |
aaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaac |
185 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28472025 |
aaattcccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaac |
28471966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 5896939 - 5897026
Alignment:
| Q |
25 |
actgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccaca |
112 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5896939 |
actgcaggatagtcacgtgacaatcctggtaaaattcttgcacatgcttgccttgggtttgacaataatacttctctataaagccaca |
5897026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 7829202 - 7829013
Alignment:
| Q |
18 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7829202 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttgtctagaaagccacagataa |
7829103 |
T |
|
| Q |
118 |
tctccgaaaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7829102 |
tctccgaaaaattcccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
7829013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 40846436 - 40846584
Alignment:
| Q |
26 |
ctgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataatctccgaa |
125 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40846436 |
ctgcaggatagtcacgcgacaatcatggtaaaattcttgcacatgcctgccttgggtttgacaataatacttctctagaaagccacagatgatctccgaa |
40846535 |
T |
|
| Q |
126 |
aaatttccaataccatgcaaaatattgacgatttggataaacctcatgg |
174 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40846536 |
aaattcctaataccatgcaaaatattgacgatttggataagcctcatgg |
40846584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 28347461 - 28347631
Alignment:
| Q |
18 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28347461 |
ttgtgggactgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttggcaataatacttctctagaaagccacagataa |
28347560 |
T |
|
| Q |
118 |
tctccgaaaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgcc |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28347561 |
tctccgaaaaatttccaataccatgcaaaatattgacgatttggataaacctgatggttataccgaacgcc |
28347631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 26404736 - 26404918
Alignment:
| Q |
25 |
actgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataatctccga |
124 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26404736 |
actgcaagatagtcacgcgacaatcctggtaaaattcttgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataatctccga |
26404835 |
T |
|
| Q |
125 |
aaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26404836 |
aaaattcccaataccatgcaaaatattgacgatttggatgaacctcatggttataccgaacgccgtgaagtgctaattgatga |
26404918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 27252338 - 27252459
Alignment:
| Q |
29 |
caggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataatctccgaaaaa |
128 |
Q |
| |
|
|||| |||||||||| ||||||| |||||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
27252338 |
caggctagtcacgcgacaatcctagtaaaattcttgcaaatgcttgtcttgggtttgacaataatacttctctagaaa---tcagatgatctccgaaaaa |
27252434 |
T |
|
| Q |
129 |
tttccaataccatgcaaaatattga |
153 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
27252435 |
ttctcaataccatgcaaaatattga |
27252459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 27 - 207
Target Start/End: Complemental strand, 44803749 - 44803569
Alignment:
| Q |
27 |
tgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataatctccgaaa |
126 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44803749 |
tgcaggatagtcacgcgacaatcctggtaaaattcttgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagatgatctccgaaa |
44803650 |
T |
|
| Q |
127 |
aatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44803649 |
aattcccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
44803569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 21063259 - 21063075
Alignment:
| Q |
26 |
ctgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataatctccgaa |
125 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || || || ||| |
|
|
| T |
21063259 |
ctgcaggatagtcacgcgacaatcgtggtaaaattcttgcacatgcttgccttgggtttgtcaataatacttctctagaaagccacaaatgatttcggaa |
21063160 |
T |
|
| Q |
126 |
aaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatgatgt |
210 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
21063159 |
aaattatcaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgtcgtgaagtactaattgatgatgt |
21063075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 43632200 - 43632055
Alignment:
| Q |
25 |
actgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataatctccga |
124 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |
|
|
| T |
43632200 |
actgcaggatagtcgcgcgacaatcctggtaaaattcttgcacatgcttgccttgggtttgacaataatacttctctagaaagccacaaatgatctctga |
43632101 |
T |
|
| Q |
125 |
aaaatttccaataccatgcaaaatattgacgatttggataaacctc |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43632100 |
aaaatttccaataccatgcaaaatattgacgatttgaataaacctc |
43632055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 42606578 - 42606666
Alignment:
| Q |
27 |
tgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagat |
115 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42606578 |
tgcaggatagtcacgcgtcaattctggtaaaatttttgcacatgattgccttgggtttgacaataatacttctctagaaagccacagat |
42606666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 7685392 - 7685574
Alignment:
| Q |
25 |
actgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataatctccga |
124 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
7685392 |
actgcaggatagtcacgcgacaatcctggtaaaattcttgcacatgtttgccttgggtttgacaataatacttctctagaaagccatagatgatctccga |
7685491 |
T |
|
| Q |
125 |
aaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7685492 |
aaaattcccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
7685574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 32631955 - 32632039
Alignment:
| Q |
95 |
cttctctagaaagccacagataatctccgaaaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttata |
179 |
Q |
| |
|
|||||||||||| ||| | || |||||| ||||| |||||||||||| |||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
32631955 |
cttctctagaaatccaaaaatgatctccaaaaaagttccaataccattcaaaatatcgacgattctgataaacctcatggttata |
32632039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 8289681 - 8289863
Alignment:
| Q |
25 |
actgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataatctccga |
124 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
8289681 |
actgcaggatagtcacgagacaatcctaataaaattcttgcacatgcttgccttgggtttgacaataatacttctctagaaagccatagatgatctccga |
8289780 |
T |
|
| Q |
125 |
aaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8289781 |
aaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgtcgtgaagtgctaattgatga |
8289863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 31668647 - 31668829
Alignment:
| Q |
25 |
actgcaggatagtcacgcggcaatcctggtaaaattgatgcacatgcttgccttgggtttgacaataatacttctctagaaagccacagataatctccga |
124 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
31668647 |
actgcaggatagtcacgcgacaatcctactaaaattcttgcacatgcttgccttgggtttgacaataatacttctctagaaagccatagatgatctccga |
31668746 |
T |
|
| Q |
125 |
aaaatttccaataccatgcaaaatattgacgatttggataaacctcatggttataccgaacgccgtgaagtgctaattgatga |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
31668747 |
aaaattcccaataccatgcaaaatattgacgatttggataaacctcatggttgtaccgaacaccgtgaaatgctaattgatga |
31668829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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