View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6172_low_2 (Length: 397)
Name: NF6172_low_2
Description: NF6172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6172_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 3 - 382
Target Start/End: Complemental strand, 45969666 - 45969286
Alignment:
| Q |
3 |
cataggttaaggatcattcgtaagcctgtttgcacttccaacttttcttgcaagctgtagtcaccagtgagtttcccataagctctaagcagaatgatcc |
102 |
Q |
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| T |
45969666 |
cataggttaaggatcattcgtaagcctgtttgcacttccaacttttcttgcaagctgtagtcaccagtgagtttcccataagctctaagcagaatgatcc |
45969567 |
T |
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| Q |
103 |
accacaatcctatcaaggaaccaaccatagnnnnnnnnntcatcttatgaagtcaatgatcaacatagattatggaaatgacttctctgttacataatta |
202 |
Q |
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| T |
45969566 |
accacaatcctatcaaggaaccaaccatagaaaaaaaaatcatcttatgaagtcaatgatcaacatagattatggaaatgacttctctgttacataatta |
45969467 |
T |
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| Q |
203 |
ttactccctctttcctataataaatgtcacaattacaac-nnnnnnnnttgtcgcagaaagaatgccactaacctgaatctacaggagcaacacgaccaa |
301 |
Q |
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| T |
45969466 |
ttactccctctgtcctataataaatgtcacaattacaacaaaaaaaaattgtcgcagaaagaatgccactaacctgaatctacaggagcaacgcgaccaa |
45969367 |
T |
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| Q |
302 |
tagccgattccccaaaatcaggatctaaaacttcttccgtccttttgtcatcaaattccatagttttaactttgaaacttg |
382 |
Q |
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| T |
45969366 |
tagccgattccccaaaatcaggatctaaaacttcttccgtctttttgtcatcaaattccatagttttaactttgaaacttg |
45969286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 37654089 - 37654155
Alignment:
| Q |
272 |
aacctgaatctacaggagcaacacgaccaatagccgattccccaaaatcaggatctaaaacttcttc |
338 |
Q |
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| T |
37654089 |
aacctgaatctacaggtgcaactcgaccaatagctgattccccaaaatcaggatctaaaacttcttc |
37654155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 37653864 - 37653958
Alignment:
| Q |
24 |
aagcctgtttgcacttccaacttttcttgcaagctgtagtcaccagtgagtttcccataagctctaagcagaatgatccaccacaatcctatcaa |
118 |
Q |
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| T |
37653864 |
aagcctgtttgaacatcaaccctttcttgcaaactgtagtcaccggtgatcttcccataagcccgtaataggatgatccaccacaatcctatcaa |
37653958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 50761841 - 50761900
Alignment:
| Q |
273 |
acctgaatctacaggagcaacacgaccaatagccgattccccaaaatcaggatctaaaac |
332 |
Q |
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| T |
50761841 |
acctgaatcgacaggggcaacacggcctatagctgattcaccaaaatcaggatctgaaac |
50761900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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