View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6172_low_3 (Length: 282)
Name: NF6172_low_3
Description: NF6172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6172_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 2564255 - 2563997
Alignment:
| Q |
17 |
acttcctggcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagtccttcttcccaccatagaattcctagtaaaattattgagtt |
116 |
Q |
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| T |
2564255 |
acttccttgcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagtccttcttcccaccatagaattcctagtaaaattattgagtt |
2564156 |
T |
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| Q |
117 |
aattctttctttggaacta---atgtttagtaaaagatcattagtttgttatatgtatctgtaaatataaagacctgtgttagtaatgtttgaactccaa |
213 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564155 |
aattctttctttggaactactaatgtttagtaaaagatcattagtttgttatatgtatgtgtaaatataaagacctgtgttagtaatgtttgaactccaa |
2564056 |
T |
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| Q |
214 |
caaatttgttatcccagctgaactcagacgctgcctgattccaaccttggttatctgtg |
272 |
Q |
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| T |
2564055 |
caaatttgttatcccagctgaactcagacgctgcctgattccaaccttggttatctgtg |
2563997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 266
Target Start/End: Complemental strand, 2573944 - 2573853
Alignment:
| Q |
175 |
taaatataaagacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcctgattccaaccttggtta |
266 |
Q |
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| T |
2573944 |
taaatatgaatacctgtgttagtaatgtttgagctccaacaaatttgttatcccagctaaattcagacactgcttgactccaaccttggtta |
2573853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 2574137 - 2574055
Alignment:
| Q |
17 |
acttcctggcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagtccttcttcccaccatagaattcct |
99 |
Q |
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||||||||||||||| |||||||||||||||||| ||||| | |||| ||| ||||| || | | |||| ||||| ||||||| |
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| T |
2574137 |
acttcctggcatcaatgcacatataaatgattcagcatcagtctgaaacttggctaactcttccctcccgccataaaattcct |
2574055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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