View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6173_high_1 (Length: 375)
Name: NF6173_high_1
Description: NF6173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6173_high_1 |
 |  |
|
| [»] scaffold0603 (1 HSPs) |
 |  |  |
|
| [»] scaffold0267 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 366
Target Start/End: Original strand, 5988768 - 5989125
Alignment:
| Q |
9 |
tgtgatggattaccatcagctgcaataaaagttggggctcttctccgtaccgaattgtcctcaaatgactggtattatatgctagaaagtaacatttggg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||| ||||||||||| ||||| || ||||| ||||||||| | |
|
|
| T |
5988768 |
tgtgatggattaccatcagctgcaataaaagtcggggctcttctccgtaccaatttgtccccaaatgactggaattatgtgttagaatgtaacattttga |
5988867 |
T |
 |
| Q |
109 |
ggtggataggtcatgggatgcaagctaatctacgattgagctactctcatctttcgactcctttaaaaggctgctttgcgtattgttcaatttttccaaa |
208 |
Q |
| |
|
|| ||||||| ||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5988868 |
agttgataggttatgggttgcatgccaatctacaattgagctactctcatctttcgactcctttaaaaggctgctttgcatattgttcaatttttccaaa |
5988967 |
T |
 |
| Q |
209 |
ggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagtagaatcgtccacagatcatgcaagtttggaaaaagttggagaa |
308 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5988968 |
ggagtccgtcttagaaaaaatgagggtagttcagttgtggattgcagaaggtttagtagaatcgtccacagatcatgcaagtttggaaaaagttggagaa |
5989067 |
T |
 |
| Q |
309 |
gaatactttgatatactagtgtcaaggtcattgatacaacggcgatctattgatgatg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5989068 |
gaatactttgatatactagtgtcaaggtcattgatacaacggcgatctattgatgatg |
5989125 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 9 - 363
Target Start/End: Original strand, 2919770 - 2920124
Alignment:
| Q |
9 |
tgtgatggattaccatcagctgcaataaaagttggggctcttctccgtaccgaattgtcctcaaatgactggtattatatgctagaaagtaacatttggg |
108 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||||||||||||| | ||| |||||||| | || ||||| | ||| |||||| | ||||||| ||| |
|
|
| T |
2919770 |
tgtgacggattaccattagctgcaatatcagttggggctcttcttcatactgaattgtctgtagataactggaagtatgtgctaggagttaacattgggg |
2919869 |
T |
 |
| Q |
109 |
ggtggataggtcatgggatgcaagctaatctacgattgagctactctcatctttcgactcctttaaaaggctgctttgcgtattgttcaatttttccaaa |
208 |
Q |
| |
|
| ||||| | ||| | | ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
2919870 |
aattgatagattatgaggtccaagccggtctacaattgagctacttctatctttcgactcctttaaaacgctgctttgcatattgttcaatttttccaaa |
2919969 |
T |
 |
| Q |
209 |
ggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagtagaatcgtccacagatcatgcaagtttggaaaaagttggagaa |
308 |
Q |
| |
|
||||||| |||||||||||| || |||||| |||||||||||||||||||| ||||||||||| |||||| ||| ||||||| |||||||||||| ||| |
|
|
| T |
2919970 |
ggagtccatcttagaaaaaaagagggtagttcagttgtggattgcagaaggcttagtagaatcttccacaagtcaggcaagttcggaaaaagttggggaa |
2920069 |
T |
 |
| Q |
309 |
gaatactttgatatactagtgtcaaggtcattgatacaacggcgatctattgatg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| | ||||||||||||| |
|
|
| T |
2920070 |
gaatactttgatatactagtgtcaaggtcgttaatacagagacgatctattgatg |
2920124 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 157 - 341
Target Start/End: Original strand, 5966215 - 5966390
Alignment:
| Q |
157 |
atctttcgactcctttaaaaggctgctttgcgtattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcaga |
256 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| ||||||||||||||||| ||| ||||| || ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
5966215 |
atctttcgactcttttaaaaaactgctttgcatattgttcaatttttccgaagaagtccatcatagaaaaaaatttggtagttcagttgtggattgcaga |
5966314 |
T |
 |
| Q |
257 |
aggtttagtagaatcgtccacagatcatgcaagtttggaaaaagttggagaagaatactttgatatactagtgtcaaggtcattg |
341 |
Q |
| |
|
||| |||||||||||||||| | | || |||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5966315 |
aggcttagtagaatcgtccataaacca---------ggaaaaagttggtgaagaatactttgatgtactagtgtcaaggtcattg |
5966390 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 189 - 360
Target Start/End: Complemental strand, 7492040 - 7491878
Alignment:
| Q |
189 |
tattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagtagaatcgtccacagatcatgcaa |
288 |
Q |
| |
|
|||||||| |||||||||||| ||||| |||||||||||| ||| |||| |||||||||||||||||||| || |||||||||| |||||||||| |
|
|
| T |
7492040 |
tattgttctatttttccaaagaagtccatcttagaaaaaaatatgttagttcagttgtggattgcagaaggctttgtagaatcgtacacagatcat---- |
7491945 |
T |
 |
| Q |
289 |
gtttggaaaaagttggagaagaatactttgatatactagtgtcaaggtcattgatacaacggcgatctattg |
360 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| |||||||| || |||||||| || ||||||||| |
|
|
| T |
7491944 |
-----gaaaaatttggagaagaatactttgatgtacttgtgtcaagttcgttgatacatcgatgatctattg |
7491878 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 157 - 360
Target Start/End: Complemental strand, 11497324 - 11497130
Alignment:
| Q |
157 |
atctttcgactcctttaaaaggctgctttgcgtattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcaga |
256 |
Q |
| |
|
||||||| ||||||||||| | |||||||| ||||| ||||||||||| ||| | ||| |||||||||||| || |||| ||| ||||||||||||| |
|
|
| T |
11497324 |
atctttctcctcctttaaaacggtgctttgcatattgctcaatttttccgaagaactccatcttagaaaaaaatgtgatagttcagctgtggattgcaga |
11497225 |
T |
 |
| Q |
257 |
aggtttagtagaatcgtccacagatcatgcaagtttggaaaaagttggagaagaatactttgatatactagtgtcaaggtcattgatacaacggcgatct |
356 |
Q |
| |
|
||| |||||||||||||||| |||||| ||||||||| ||| |||||||||||||||||||||| ||| |||| |||||||| || || ||| |
|
|
| T |
11497224 |
aggcttagtagaatcgtccatagatca---------ggaaaaagtcggaaaagaatactttgatatactagtatcatggtcgttgatacatcgacggtct |
11497134 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 166 - 360
Target Start/End: Original strand, 5052299 - 5052484
Alignment:
| Q |
166 |
ctcctttaaaaggctgctttgcgtattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt |
265 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||| ||| | | | |||||||||||| |||| || |||||||||||||||||||| || || |
|
|
| T |
5052299 |
ctcctttaaaacagtgctttgaatattgttcaatttttccgaagaaatacatcttagaaaaaaatgtggtggttcagttgtggattgcagaagggttggt |
5052398 |
T |
 |
| Q |
266 |
agaatcgtccacagatcatgcaagtttggaaaaagttggagaagaatactttgatatactagtgtcaaggtcattgatacaacggcgatctattg |
360 |
Q |
| |
|
|||||| ||| ||||||| ||||||||| |||||||| ||||||||| |||||||||||| || |||||||| || | |||||||| |
|
|
| T |
5052399 |
agaatcctccgcagatca---------ggaaaaagtcggagaagagtactttgatgaactagtgtcaagatcgttgatacatcgacaatctattg |
5052484 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 334
Target Start/End: Complemental strand, 11490877 - 11490689
Alignment:
| Q |
137 |
tctacgattgagctactctcatctttcgactcctttaaaaggctgctttgcgtattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggta |
236 |
Q |
| |
|
||||| |||||||||| | |||| ||| ||||||||||| ||||||| ||||||||||||||||| ||| ||||| |||||||||||| ||||| |
|
|
| T |
11490877 |
tctacaattgagctaccattatctatcggctcctttaaaacagtgctttgaatattgttcaatttttccgaagaagtccatcttagaaaaaaatgtggta |
11490778 |
T |
 |
| Q |
237 |
gtgcagttgtggattgcagaaggtttagtagaatcgtccacagatcatgcaagtttggaaaaagttggagaagaatactttgatatactagtgtcaag |
334 |
Q |
| |
|
|| |||||||||||| || ||| || |||||||| ||| | || || ||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
11490777 |
gttcagttgtggattacaagagggttggtagaatcatccgcggacca---------ggaaaaagtcggagaagaatactttgatgaactagtgtcaag |
11490689 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 266
Target Start/End: Complemental strand, 4091988 - 4091888
Alignment:
| Q |
166 |
ctcctttaaaaggctgctttgcgtattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt |
265 |
Q |
| |
|
||||||||||||| || ||||| ||||||||||||||| | ||| | || ||||| | |||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
4091988 |
ctcctttaaaaggatgttttgcttattgttcaattttttcgaagaattcaatcttaaagaaaaaaatggtagttcagttgtggattgcagaaggtttagt |
4091889 |
T |
 |
| Q |
266 |
a |
266 |
Q |
| |
|
| |
|
|
| T |
4091888 |
a |
4091888 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 266
Target Start/End: Complemental strand, 4114729 - 4114629
Alignment:
| Q |
166 |
ctcctttaaaaggctgctttgcgtattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt |
265 |
Q |
| |
|
||||||||||| | |||||||| || |||||||||||||| ||| | || | ||||| |||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
4114729 |
ctcctttaaaaagatgctttgcttactgttcaatttttccgaagaactcaattttagagaaaaatatggtcgttcagttgtggattgcagaaggtttagt |
4114630 |
T |
 |
| Q |
266 |
a |
266 |
Q |
| |
|
| |
|
|
| T |
4114629 |
a |
4114629 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 266
Target Start/End: Original strand, 4130348 - 4130448
Alignment:
| Q |
166 |
ctcctttaaaaggctgctttgcgtattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt |
265 |
Q |
| |
|
||||| ||||||| |||||||| ||||||||||||||||| ||| | || || |||| |||| |||||||| || ||||||||||||||||| ||||| |
|
|
| T |
4130348 |
ctcctataaaaggatgctttgcttattgttcaatttttccgaagaactcaatcatagagaaaaaaatggtagttcaattgtggattgcagaaggcttagt |
4130447 |
T |
 |
| Q |
266 |
a |
266 |
Q |
| |
|
| |
|
|
| T |
4130448 |
a |
4130448 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 351
Target Start/End: Complemental strand, 911279 - 911169
Alignment:
| Q |
241 |
agttgtggattgcagaaggtttagtagaatcgtccacagatcatgcaagtttggaaaaagttggagaagaatactttgatatactagtgtcaaggtcatt |
340 |
Q |
| |
|
||||||||||||||||||| |||||| | ||||| | |||| ||| | ||||||||||||||| |||||||||||| |||||||||||||||| | |
|
|
| T |
911279 |
agttgtggattgcagaaggcttagtacatcagtccagaagtcataaaagctgggaaaaagttggagaggaatactttgatgaactagtgtcaaggtcact |
911180 |
T |
 |
| Q |
341 |
gatacaacggc |
351 |
Q |
| |
|
||||| |||| |
|
|
| T |
911179 |
aatacatcggc |
911169 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 166 - 266
Target Start/End: Complemental strand, 4060251 - 4060151
Alignment:
| Q |
166 |
ctcctttaaaaggctgctttgcgtattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt |
265 |
Q |
| |
|
||||||||||||| || ||||| || |||||||||||| | ||| | || ||||||| |||| | |||| | |||||||||||||||||||||||||| |
|
|
| T |
4060251 |
ctcctttaaaaggatgttttgcttactgttcaattttttcgaagaattcaatcttagagaaaaaaacggtaattcagttgtggattgcagaaggtttagt |
4060152 |
T |
 |
| Q |
266 |
a |
266 |
Q |
| |
|
| |
|
|
| T |
4060151 |
a |
4060151 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 166 - 266
Target Start/End: Complemental strand, 4079860 - 4079760
Alignment:
| Q |
166 |
ctcctttaaaaggctgctttgcgtattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt |
265 |
Q |
| |
|
||||||||||||| || ||||| || |||||||||||| | ||| | || ||||||| |||| | |||| | |||||||||||||||||||||||||| |
|
|
| T |
4079860 |
ctcctttaaaaggatgttttgcttactgttcaattttttcgaagaattcaatcttagagaaaaaaacggtaattcagttgtggattgcagaaggtttagt |
4079761 |
T |
 |
| Q |
266 |
a |
266 |
Q |
| |
|
| |
|
|
| T |
4079760 |
a |
4079760 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 167 - 366
Target Start/End: Original strand, 16447212 - 16447411
Alignment:
| Q |
167 |
tcctttaaaaggctgctttgcgtattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagta |
266 |
Q |
| |
|
|||| |||||| |||||||| |||||||||| |||||||||| | ||| |||||||||| | || | || | ||||||||||||||||||||||||||| |
|
|
| T |
16447212 |
tcctctaaaagaatgctttgcatattgttcaaattttccaaagaattccatcttagaaaagaagacgataattcagttgtggattgcagaaggtttagta |
16447311 |
T |
 |
| Q |
267 |
gaatcgtccacagatcatgcaagtttggaaaaagttggagaagaatactttgatatactagtgtcaaggtcattgatacaacggcgatctattgatgatg |
366 |
Q |
| |
|
|||||||||||| ||| | ||| |||||||||||||||||||||||||||| |||||||||| |||| |||||||||| |||||||| ||||||| |
|
|
| T |
16447312 |
gaatcgtccacaagtcaggagtgttgggaaaaagttggagaagaatactttgatctactagtgtcgaggttgttgatacaactacgatctatcgatgatg |
16447411 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0603 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 165 - 366
Target Start/End: Complemental strand, 4532 - 4340
Alignment:
| Q |
165 |
actcctttaaaaggctgctttgcgtattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttag |
264 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||||||||||||||| ||||| || ||||||||| || ||| |||||||||||||||||||| |||| |
|
|
| T |
4532 |
actcctttaaaacgatgctttgagtattgttcaatttttccaaagaagtccatcatagaaaaaaatttgacagttcagttgtggattgcagaaggcttag |
4433 |
T |
 |
| Q |
265 |
tagaatcgtccacagatcatgcaagtttggaaaaagttggagaagaatactttgatatactagtgtcaaggtcattgatacaacggcgatctattgatga |
364 |
Q |
| |
|
|| ||||||||||| | || |||||||||||||||||||||||||| | || |||||||||||||||||||||| || |||||||||| ||| |
|
|
| T |
4432 |
taaaatcgtccacaaacca---------ggaaaaagttggagaagaatactttgctgtattagtgtcaaggtcattgatacatcgacgatctattggtga |
4342 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 157 - 346
Target Start/End: Original strand, 18388420 - 18388600
Alignment:
| Q |
157 |
atctttcgactcctttaaaaggctgctttgcgtattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcaga |
256 |
Q |
| |
|
|||| ||||||||||||||| | |||||||| | |||||||||||| |||||| ||||| ||||| ||||||| ||||||| ||||||||||||||||| |
|
|
| T |
18388420 |
atctatcgactcctttaaaacggtgctttgcattttgttcaattttcccaaagaagtccatcttaaaaaaaattgtggtagttcagttgtggattgcaga |
18388519 |
T |
 |
| Q |
257 |
aggtttagtagaatcgtccacagatcatgcaagtttggaaaaagttggagaagaatactttgatatactagtgtcaaggtcattgataca |
346 |
Q |
| |
|
||| ||| ||||||||| | |||| || ||||||||| | |||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
18388520 |
aggcttattagaatcgttcgcagacca---------ggaaaaagtcgcagaagaatactttgatgaactagtgtcaaggtctttgataca |
18388600 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 137 - 360
Target Start/End: Original strand, 17312124 - 17312338
Alignment:
| Q |
137 |
tctacgattgagctactctcatctttcgactcctttaaaaggctgctttgcgtattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggta |
236 |
Q |
| |
|
||||| ||||||||||| | ||||| | |||||||||| | ||||||| ||||||||||||||||| ||| | ||| |||||||||||| |||| |
|
|
| T |
17312124 |
tctacaattgagctactgttatcttctggatcctttaaaacggtgctttgaatattgttcaatttttccgaagaaatccatcttagaaaaaaatgcggta |
17312223 |
T |
 |
| Q |
237 |
gtgcagttgtggattgcagaaggtttagtagaatcgtccacagatcatgcaagtttggaaaaagttggagaagaatactttgatatactagtgtcaaggt |
336 |
Q |
| |
|
|| || ||||||||||||||||| || |||||||||||| ||||||| ||||||||| |||||||||||||||||| |||||||||||| | |
|
|
| T |
17312224 |
gttcaattgtggattgcagaagggttggtagaatcgtccgcagatca---------ggaaaaagtcggagaagaatactttgatgaactagtgtcaagat |
17312314 |
T |
 |
| Q |
337 |
cattgatacaacggcgatctattg |
360 |
Q |
| |
|
| |||||||| || |||||||||| |
|
|
| T |
17312315 |
cgttgatacatcgacgatctattg |
17312338 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 266
Target Start/End: Original strand, 13933775 - 13933875
Alignment:
| Q |
166 |
ctcctttaaaaggctgctttgcgtattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcagaaggtttagt |
265 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||||||| ||| | || ||||||| |||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
13933775 |
ctcctttaaaaggatgctttgcttactgttcaatttttccgaagaactcaatcttagagaaaaatatggtagttcagttgtggattgcagaaggtttagt |
13933874 |
T |
 |
| Q |
266 |
a |
266 |
Q |
| |
|
| |
|
|
| T |
13933875 |
a |
13933875 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 345
Target Start/End: Original strand, 19087 - 19275
Alignment:
| Q |
157 |
atctttcgactcctttaaaaggctgctttgcgtattgttcaatttttccaaaggagtccgtcttagaaaaaatgatggtagtgcagttgtggattgcaga |
256 |
Q |
| |
|
||||| || ||||||||||| | || ||||| || |||||||||||||||||| | ||| |||| |||||| |||||||| ||||| ||||| ||||| |
|
|
| T |
19087 |
atcttccggctcctttaaaaagatgttttgcttactgttcaatttttccaaagaactccatcttgcaaaaaaatatggtagttcagttatggatggcaga |
19186 |
T |
 |
| Q |
257 |
aggtttagtagaatcgtccacagatcatgcaagtttggaaaaagttggagaagaatactttgatatactagtgtcaaggtcattgatac |
345 |
Q |
| |
|
||| || || | ||||| | || ||||| ||||||||| |||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
19187 |
aggcttggtgcataagtccaaaagacagaaaagttgggaaaaagtaggagaagaatactttgatgaactagtgtcaaggtcactgatac |
19275 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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