View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6173_high_4 (Length: 286)

Name: NF6173_high_4
Description: NF6173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6173_high_4
NF6173_high_4
[»] chr5 (5 HSPs)
chr5 (89-269)||(4750900-4751080)
chr5 (89-269)||(4741635-4741816)
chr5 (200-257)||(4759280-4759337)
chr5 (16-54)||(4741817-4741855)
chr5 (16-54)||(4751081-4751119)
[»] chr7 (1 HSPs)
chr7 (116-187)||(13583616-13583687)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 89 - 269
Target Start/End: Complemental strand, 4751080 - 4750900
Alignment:
Q  89 ccctatgacttggccttannnnnnnnaatcaagaagaaaggacaaaacaaagcaaaaactacgatcttaggcgaagaactccaagagcattgacaagaat 188  Q
    ||||||||||||||||||        ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4751080 ccctatgacttggccttattttttttaatcaagaagaaaggacaaaataaagtaaaaactacgatcttaggcgaagaactccaagagcattgacaagaat 4750981  T
Q  189 agagacagaacaatcccatgatttatgttacttttataattcttgcaagacaattatctgtaggccttgcaattggcaggt 269  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4750980 agagagagaacaatcccatgatttatgttacttttataattcttgcaagacaattatctgtaggccttgcaattggcaggt 4750900  T

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Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 89 - 269
Target Start/End: Complemental strand, 4741816 - 4741635
Alignment:
Q  89 ccctatgacttggccttannnnnnnnaatcaagaagaaaggacaaaacaaagcaaaaactacgatcttaggcgaagaactccaagagcattgacaagaat 188  Q
    ||||||||||||||||||        ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4741816 ccctatgacttggccttattttttttaatcaagaagaaaggacaaaataaagcaaaaactacgattttaggcgaagaactccaagagcattgacaagaat 4741717  T
Q  189 agagacagaacaatcccatgatttatgttacttttataattcttgcaagac-aattatctgtaggccttgcaattggcaggt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4741716 agagacagaacaatcccatgatttatgttacttttataattcttgcaagacaaattatctgtaggccttgcaattggcaggt 4741635  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 4759337 - 4759280
Alignment:
Q  200 aatcccatgatttatgttacttttataattcttgcaagacaattatctgtaggccttg 257  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  4759337 aatcccatgatttatgttacttttataattcttgcaaggcaattatctttaggccttg 4759280  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 4741855 - 4741817
Alignment:
Q  16 agagtgtcaacttttgtgttaaaaaattgtgttccaaaa 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4741855 agagtgtcaacttttgtgttaaaaaattgtgttccaaaa 4741817  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 4751119 - 4751081
Alignment:
Q  16 agagtgtcaacttttgtgttaaaaaattgtgttccaaaa 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4751119 agagtgtcaacttttgtgttaaaaaattgtgttccaaaa 4751081  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 13583687 - 13583616
Alignment:
Q  116 atcaagaagaaaggacaaaacaaagcaaaaactacgatcttaggcgaagaactccaagagcattgacaagaa 187  Q
    ||||||||||||||||||||||||| ||||||||| || ||||||||  |||||||||| ||| || |||||    
T  13583687 atcaagaagaaaggacaaaacaaagtaaaaactacaatattaggcgatcaactccaagaacatcgaaaagaa 13583616  T

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