View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6173_low_1 (Length: 498)
Name: NF6173_low_1
Description: NF6173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6173_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 9 - 489
Target Start/End: Original strand, 38260748 - 38261227
Alignment:
| Q |
9 |
gacatcatcatcaataacaacaagaacaacaacatgatgatgacaatgaatacttatgttgctgcttcttctcatcttgatctccatgtaggcttatcat |
108 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38260748 |
gacatcatcatcaataacaacaagaataacaacatgatgatgacaatgaatacttatgttgctgcttcttctcatcttgatctccatgtaggcttatcat |
38260847 |
T |
|
| Q |
109 |
cacaatcacaagaactgccttctcaaacaattaatatttcagttgctgatgttggggatgttaacaagaacgatatgagaaagaagaagaagagaaatga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38260848 |
cacaatcacaagaactgccttctcaaacaattaatatttcagttgctgatgttggg-atgttaacaagaacgatatgagaaagaagaagaagagaaatga |
38260946 |
T |
|
| Q |
209 |
aaatattaatgatggaagaatccacagcctaccacacaagaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacttcacaaaaattt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
38260947 |
aaatattaatgatggaagaatccacagcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaattt |
38261046 |
T |
|
| Q |
309 |
gctaatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattc |
408 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
38261047 |
gctaatcatgtttcatcaagtcactgcaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcagattc |
38261146 |
T |
|
| Q |
409 |
aaaagctcaatgacggaataactacttttgttcctgttgttgcttgtgctgataagaaacatgcttcaatcaatgatgatg |
489 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||| |
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| T |
38261147 |
aaaagctcaatgatggaacaactacttttgttcctgttattgcttgtggtgataagtcacatgcttatgtcaatgatgatg |
38261227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 26 - 489
Target Start/End: Original strand, 38244467 - 38244927
Alignment:
| Q |
26 |
caacaagaacaacaacatgatgatgacaatgaatacttatgttgctgcttcttctcatcttgatctccatgtaggcttatcatcacaatcacaagaactg |
125 |
Q |
| |
|
|||||| |||||||||| |||||||| ||||||||||| | || ||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
38244467 |
caacaacaacaacaacaagatgatgaaaatgaatacttcta---ctacttcttctcatcttgatcttcatgtaggcttatcatcacaactacaagaactg |
38244563 |
T |
|
| Q |
126 |
ccttctcaaacaattaatatttcagttgctgatgttggggatgttaacaagaacgatatgagaaagaagaagaagagaaatgaaaatattaatgatggaa |
225 |
Q |
| |
|
||||||||||| || ||| | | ||| |||||||| ||||| |||||||||| |||| || |||||||||||||| ||||||||||| ||||||| | |
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|
| T |
38244564 |
ccttctcaaactatcaatttatttgttactgatgttagggatattaacaagaatgataaaaggaagaagaagaagagcaatgaaaatatcgatgatggta |
38244663 |
T |
|
| Q |
226 |
gaatccacagcctaccacacaagaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacttcacaaaaatttgctaatcatgtttcatc |
325 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
38244664 |
aaattcacagcctaccacacgagaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatc |
38244763 |
T |
|
| Q |
326 |
aagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacgga |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
38244764 |
aagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgatgga |
38244863 |
T |
|
| Q |
426 |
ataactacttttgttcctgttgttgcttgtgctgataagaaacatgcttcaatcaatgatgatg |
489 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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|
| T |
38244864 |
agaactacttttgttcctgttgttgcttgtgctgataagtcacatgcttcaatcaataatgatg |
38244927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 212 - 445
Target Start/End: Complemental strand, 47285737 - 47285507
Alignment:
| Q |
212 |
tattaatgatggaagaatccacagcctaccacacaagaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacttcacaaaaatttgct |
311 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||| ||||| ||||||||||| ||| | ||||| | ||||||||| || | | ||| ||||| ||||| ||| |
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|
| T |
47285737 |
tattgatgatggtagaatccacagtctacctcacaataaacatggaccgtacacgtgttcagagtgcaacaaagtaatagcaacatcacagaaattcgct |
47285638 |
T |
|
| Q |
312 |
aatcatgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaa |
411 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| ||||||||||| ||| |||||||||| |
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|
| T |
47285637 |
gctcatgt---atcaagtcactacaagactgaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagagaccatatctccagattcaaa |
47285541 |
T |
|
| Q |
412 |
agctcaatgacggaataactacttttgttcctgt |
445 |
Q |
| |
|
||||| |||| |||| ||||||| ||||| |||| |
|
|
| T |
47285540 |
agctcgatgatggaacaactactcttgtttctgt |
47285507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 217 - 442
Target Start/End: Complemental strand, 47307289 - 47307067
Alignment:
| Q |
217 |
atgatggaagaatccacagcctaccacacaagaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacttcacaaaaatttgctaatca |
316 |
Q |
| |
|
||||||| |||| |||||| ||| ||||||| ||| |||||||||| | ||| | | || |||||| || | | ||| |||||||||||||||| ||| |
|
|
| T |
47307289 |
atgatggtagaacccacagtctatcacacaataaaaatggaccatatacgtgtccaaagtgtaacaaagtactagcaacatcacaaaaatttgctagtca |
47307190 |
T |
|
| Q |
317 |
tgtttcatcaagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagatt-caaaagct |
415 |
Q |
| |
|
|| |||||| |||||||||| |||||||||||||| | |||||||||||||| |||||||| ||||||||||| || || |||| |||||||| |
|
|
| T |
47307189 |
tg---catcaatacactacaagtcagaaagtgaagaagagaaaaaaaagagatacatgtctaggatccgaaagagaccagatc-tccgattccaaaagct |
47307094 |
T |
|
| Q |
416 |
caatgacggaataactacttttgttcc |
442 |
Q |
| |
|
|||||| |||| ||||||||||||||| |
|
|
| T |
47307093 |
caatgatggaacaactacttttgttcc |
47307067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 325 - 453
Target Start/End: Complemental strand, 2589674 - 2589546
Alignment:
| Q |
325 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacgg |
424 |
Q |
| |
|
||||||||||||||| |||| | |||||| |||||||||||||||| |||| ||| ||||||||||| ||| | |||||||||||||||||| || |
|
|
| T |
2589674 |
caagtcactacaagtctgaaactctagaagagagaaaaaagagatacatgtctaagatccgaaagagaccaaatctccggattcaaaagctcaatgatgg |
2589575 |
T |
|
| Q |
425 |
aataactacttttgttcctgttgttgctt |
453 |
Q |
| |
|
|| ||||||||||||||| |||||||||| |
|
|
| T |
2589574 |
aacaactacttttgttccagttgttgctt |
2589546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 449
Target Start/End: Complemental strand, 10299735 - 10299610
Alignment:
| Q |
325 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaa-gagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacg |
423 |
Q |
| |
|
||||||||||||||| |||| | |||||| |||||||| |||||||| |||| ||| ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
10299735 |
caagtcactacaagtctgaaactctagaagagagaaaaaaagagatacatgtctatgatctaaaagagaccaaatctccagattcaaaagctcaatgata |
10299636 |
T |
|
| Q |
424 |
gaataactacttttgttcctgttgtt |
449 |
Q |
| |
|
||| ||||||||||||||| |||||| |
|
|
| T |
10299635 |
gaacaactacttttgttccggttgtt |
10299610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 450
Target Start/End: Original strand, 2589833 - 2589923
Alignment:
| Q |
360 |
aaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacggaataactacttttgttcctgttgttg |
450 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||| |||||| |||||||| ||||||| |||| ||| |||||||||| ||||||| |
|
|
| T |
2589833 |
aaaaagagatacatgtctaggatcccaaagagaccaaatcttcatattcaaaaactcaatgttggaacaacaacttttgttcgagttgttg |
2589923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 450
Target Start/End: Original strand, 22222532 - 22222657
Alignment:
| Q |
325 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgacgg |
424 |
Q |
| |
|
||||||||||||| || |||| | ||||||| |||||||||||||||| |||||||| | ||||||| | ||| ||||||||||| ||||||| || |
|
|
| T |
22222532 |
caagtcactacaattttgaaactcaagaagaaagaaaaaagagatacatgtctaggatcccaaagagaacaaatctgcagattcaaaaactcaatgttgg |
22222631 |
T |
|
| Q |
425 |
aataactacttttgttcctgttgttg |
450 |
Q |
| |
|
|| ||| || |||||| | ||||||| |
|
|
| T |
22222632 |
aacaacaacatttgtttcagttgttg |
22222657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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