View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6174_high_2 (Length: 268)

Name: NF6174_high_2
Description: NF6174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6174_high_2
NF6174_high_2
[»] chr3 (17 HSPs)
chr3 (1-256)||(46554304-46554572)
chr3 (6-256)||(46531664-46531927)
chr3 (99-226)||(16025332-16025459)
chr3 (155-256)||(46538892-46538993)
chr3 (98-242)||(5160125-5160268)
chr3 (161-256)||(46483961-46484056)
chr3 (107-226)||(46490568-46490687)
chr3 (155-256)||(46544364-46544465)
chr3 (161-226)||(51943803-51943868)
chr3 (98-226)||(45883882-45884010)
chr3 (100-242)||(5156097-5156239)
chr3 (100-256)||(46479642-46479798)
chr3 (172-256)||(46549104-46549188)
chr3 (170-256)||(45902876-45902962)
chr3 (106-256)||(46473787-46473937)
chr3 (162-256)||(46526542-46526635)
chr3 (99-179)||(47414380-47414460)
[»] chr4 (3 HSPs)
chr4 (98-212)||(15555862-15555976)
chr4 (170-223)||(35162361-35162414)
chr4 (163-227)||(35155333-35155397)
[»] chr7 (3 HSPs)
chr7 (100-256)||(17708125-17708281)
chr7 (100-256)||(17735779-17735935)
chr7 (106-188)||(17744966-17745048)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 46554572 - 46554304
Alignment:
Q  1 ttgtctaaagcctgatgaagctgtcaaaaaagtgaatttatgggctacagaaaagacaaacggacttattactgatgttctttcgtgcgggtcaattga- 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  46554572 ttgtctaaagcctgatgaagctgtcaaaaaagtgaatttatgggctacagaaaagacaaacggacttattactgatgttctttcgtgcgggtcaattgat 46554473  T
Q  100 ------------ctcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttc 187  Q
                ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46554472 agtttaaccagactcatttttgctaatgcactatattttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttc 46554373  T
Q  188 tagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatg 256  Q
    | |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  46554372 ttgatggtagctcattcaaggttcccttcaagaccagcagggagagtcagtttatcagtgtttttgatg 46554304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 46531664 - 46531927
Alignment:
Q  6 taaagcctgatgaagctgtcaaaaaagtgaatttatgggctacagaaaagacaaacggacttattactgatgttctttcgtgcgggtcaattga------ 99  Q
    ||||| |||||||||| |||||||||||||||  |||||||| | || |||||||||||| ||||  ||||||||||||    |||||||||||          
T  46531664 taaaggctgatgaagccgtcaaaaaagtgaatgcatgggctaaaaaagagacaaacggacgtattggtgatgttctttcacctgggtcaattgatagctt 46531763  T
Q  100 -------ctcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagat 192  Q
           |||||||||||||||||||| |||||||| || |||||||||||||| ||||| |||||| ||||||||||| |||||||||||||||| | |    
T  46531764 aactggactcatttttgctaatgcactctactttaatggagcatggcatcaaccatttgatgcttcaaaaacaaaagaccatgattttcaccttctcggt 46531863  T
Q  193 ggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatg 256  Q
    || |||||| | |||||||||||||||||||||| | |||  |||||||| | || ||||||||    
T  46531864 ggcagctcaattaaggttcccttcatgactagcaagaagaagcagtttataaatgcttttgatg 46531927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 99 - 226
Target Start/End: Original strand, 16025332 - 16025459
Alignment:
Q  99 actcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagc 198  Q
    |||||| |||||||||||||| ||||||||||| |  ||| |||||| |||||| ||||| |||||||||||||||||||||||| ||||  |||| | |    
T  16025332 actcatatttgctaatgcactttactttaaaggggtgtgggatcaacagtttgatgcttcggaaacaaaagactatgattttcacattctgaatggcaac 16025431  T
Q  199 tcattcaaggttcccttcatgactagca 226  Q
      | |||| |||||||||||||| ||||    
T  16025432 gtaatcaaagttcccttcatgaccagca 16025459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 46538892 - 46538993
Alignment:
Q  155 cttcagaaacaaaagactatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttga 254  Q
    ||||| |||||||||||||||||||| |||||||  |||| |||||| ||||||||||||||||||| ||| ||||| | ||  |||| |||||||||||    
T  46538892 cttcaaaaacaaaagactatgattttaaccttcttaatggcagctcagtcaaggttcccttcatgacaagccgggagtgacaacttattagtgtttttga 46538991  T
Q  255 tg 256  Q
    ||    
T  46538992 tg 46538993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 242
Target Start/End: Original strand, 5160125 - 5160268
Alignment:
Q  98 gactcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtag 197  Q
    ||||||| |||||||||||||| ||||||||||| ||||||  | |   |||||| | |||  |||| ||||||||||||||||||||| |  |||| ||    
T  5160125 gactcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgtttcgaaaacgaaagactatgattttcaccttttgaatgg-ag 5160223  T
Q  198 ctcattcaaggttcccttcatgactagcagggagagtcagtttat 242  Q
    |||| ||||||||||||||||||| |||  ||||| |||||||||    
T  5160224 ctcagtcaaggttcccttcatgaccagcgaggagaatcagtttat 5160268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 256
Target Start/End: Original strand, 46483961 - 46484056
Alignment:
Q  161 aaacaaaagactatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatg 256  Q
    ||||||||||||||||||||||||||||  |||| |||||| ||||||||||||| |||||||||| | |||  |||||||| || | ||||||||    
T  46483961 aaacaaaagactatgattttcaccttctcaatggcagctcagtcaaggttccctttatgactagcaagaagaagcagtttattagagcttttgatg 46484056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 46490568 - 46490687
Alignment:
Q  107 ttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagctcattcaa 206  Q
    ||||||||||||||||||| ||||| |  ||| || |   |||||| |||||| |||| ||||||||||||||||||||| |  |||| |||||| | ||    
T  46490568 ttgctaatgcactatacttcaaaggagtgtggaatgataagtttgatgcttcaaaaacgaaagactatgattttcaccttttgaatggcagctcaattaa 46490667  T
Q  207 ggttcccttcatgactagca 226  Q
    ||||||||||||||||||||    
T  46490668 ggttcccttcatgactagca 46490687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 46544364 - 46544465
Alignment:
Q  155 cttcagaaacaaaagactatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttga 254  Q
    ||||| |||||||||||||||||||| |||||||  |||| |||  | |||||||||| |||||||| |||| | |||| || |||||||||||||||||    
T  46544364 cttcaaaaacaaaagactatgattttaaccttctcaatggcagccaagtcaaggttcctttcatgacaagcatgaagagacaatttatcagtgtttttga 46544463  T
Q  255 tg 256  Q
    ||    
T  46544464 tg 46544465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 51943803 - 51943868
Alignment:
Q  161 aaacaaaagactatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagca 226  Q
    |||| ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  51943803 aaactaaagattatgattttcaccttctaaatggtagctcagtcaaggttcccttcatgaccagca 51943868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 45884010 - 45883882
Alignment:
Q  98 gactcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtag 197  Q
    ||||||| |||||||||||| | |||||||| || |||||| |||||||||||||  ||||  |||||||| |||| ||||||||  |||   |||||||    
T  45884010 gactcatatttgctaatgcattgtactttaagggagcatggaatcaaccgtttgatccttcgaaaacaaaatactacgattttcatattcataatggtag 45883911  T
Q  198 ctcattcaaggttcccttcatgactagca 226  Q
     ||| |||| |||||||||||||| ||||    
T  45883910 ttcagtcaaagttcccttcatgaccagca 45883882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 242
Target Start/End: Original strand, 5156097 - 5156239
Alignment:
Q  100 ctcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagct 199  Q
    ||||| |||||||||||||| ||||||||||| ||||||  | |   |||||| | ||   |||| ||||||||||||||||||||| |  |||| ||||    
T  5156097 ctcatctttgctaatgcactctactttaaaggagcatggagtgagaagtttgatgttttgaaaacgaaagactatgattttcaccttttgaatggcagct 5156196  T
Q  200 cattcaaggttcccttcatgactagcagggagagtcagtttat 242  Q
    |  ||||||||||||||||||| |||  ||||| |||||||||    
T  5156197 cggtcaaggttcccttcatgaccagcgaggagaatcagtttat 5156239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 256
Target Start/End: Original strand, 46479642 - 46479798
Alignment:
Q  100 ctcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagct 199  Q
    ||||| ||||| |||||||||||||| ||||| || ||| || |   |||||| |||||| ||||  ||||||| || ||||||||| |  ||||||||     
T  46479642 ctcatctttgccaatgcactatacttcaaaggagcgtggaatgataagtttgatgcttcaaaaacggaagactacgagtttcaccttttgaatggtagcc 46479741  T
Q  200 cattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatg 256  Q
    || ||||||||||||||||||| |||| | |||  |||||||| || | ||||||||    
T  46479742 cagtcaaggttcccttcatgaccagcaagaagaagcagtttattagagcttttgatg 46479798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 46549188 - 46549104
Alignment:
Q  172 tatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatg 256  Q
    |||||||||||||||||  |||| |||||  |||||||||||||||| || |||||| |   |||||||||||||||||||||||    
T  46549188 tatgattttcaccttctcaatggcagctcggtcaaggttcccttcataaccagcaggaatgatcagtttatcagtgtttttgatg 46549104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 45902876 - 45902962
Alignment:
Q  170 actatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatg 256  Q
    ||||| ||||| |||||||| ||||||||||| ||||||||||||||||||| |||  | |||| ||||||||| | ||||| ||||    
T  45902876 actataatttttaccttctaaatggtagctcagtcaaggttcccttcatgaccagcgagaagaggcagtttatccgcgttttcgatg 45902962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 256
Target Start/End: Original strand, 46473787 - 46473937
Alignment:
Q  106 tttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagctcattca 205  Q
    |||||||||||| | || ||||||||  ||||| ||||   | |||| ||||||  ||||||||||||||||||| |||||||  |||| |||||| | |    
T  46473787 tttgctaatgcattgtattttaaaggatcatggaatcagaagattgatgcttcaacaacaaaagactatgatttttaccttctcaatggcagctcagtta 46473886  T
Q  206 aggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatg 256  Q
    ||||| |||| |||||||||| | |||  |||||||| || | ||||||||    
T  46473887 aggtttcctttatgactagcaagaagaagcagtttattagagcttttgatg 46473937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 256
Target Start/End: Complemental strand, 46526635 - 46526542
Alignment:
Q  162 aacaaaagactatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatg 256  Q
    ||||||| ||||||||||||||||| || |||| |||||| ||||||||||||||||||| |||  | | || || |||||||||||||| ||||    
T  46526635 aacaaaaaactatgattttcacctt-taaatggcagctcagtcaaggttcccttcatgaccagcgagaatagacaatttatcagtgttttcgatg 46526542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 47414460 - 47414380
Alignment:
Q  99 actcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattt 179  Q
    |||||| |||||||||||||| ||||| ||||| |  ||| ||||||  ||||| ||||| |||||||||||||| |||||    
T  47414460 actcatctttgctaatgcactgtacttcaaaggggtgtggaatcaacaatttgatgcttcggaaacaaaagactacgattt 47414380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 15555862 - 15555976
Alignment:
Q  98 gactcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtag 197  Q
    ||||||| ||||| |||||||| |||||||||||   |||| ||||   |||||| |||||  |||| |||||||||||||||||||||||  |||||||    
T  15555862 gactcatctttgcaaatgcactgtactttaaaggactatggtatcagaagtttgatgcttccaaaacgaaagactatgattttcaccttctcaatggtag 15555961  T
Q  198 ctcattcaaggttcc 212  Q
    |||| ||||||||||    
T  15555962 ctcactcaaggttcc 15555976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 35162361 - 35162414
Alignment:
Q  170 actatgattttcaccttctagatggtagctcattcaaggttcccttcatgacta 223  Q
    |||||||||||||||||||  |||| |||||| |||||||||||||||||||||    
T  35162361 actatgattttcaccttctgaatggaagctcagtcaaggttcccttcatgacta 35162414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 35155333 - 35155397
Alignment:
Q  163 acaaaagactatgattttcaccttctagatggtagctcattcaaggttcccttcatgactagcag 227  Q
    |||||| | |||||||||||||||||  |||| |||||| ||||||||||||||||||| |||||    
T  35155333 acaaaaaaatatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagcag 35155397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 256
Target Start/End: Original strand, 17708125 - 17708281
Alignment:
Q  100 ctcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagct 199  Q
    ||||| ||||||||||||||||| || ||||| |  ||||| | |||||||||  ||||| |||| || |||||||||||| |||||||  |||| |  |    
T  17708125 ctcatatttgctaatgcactatatttcaaaggagtttggcaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagt 17708224  T
Q  200 cattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatg 256  Q
    || | ||||||||||| ||||| |||| | |   |||||||||||||  ||||||||    
T  17708225 cagtaaaggttccctttatgaccagcaagaatgatcagtttatcagttcttttgatg 17708281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 256
Target Start/End: Original strand, 17735779 - 17735935
Alignment:
Q  100 ctcatttttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttctagatggtagct 199  Q
    ||||| ||||| |||||||||||||| ||||| |  ||| | | |||||||||  ||||| |||| || |||||||||||| |||||||  |||| |  |    
T  17735779 ctcatctttgcgaatgcactatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagt 17735878  T
Q  200 cattcaaggttcccttcatgactagcagggagagtcagtttatcagtgtttttgatg 256  Q
    || | ||||||||||| ||||| |||| | | | |||||||||||||  ||||||||    
T  17735879 cagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatg 17735935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 17744966 - 17745048
Alignment:
Q  106 tttgctaatgcactatactttaaaggtgcatggcatcaaccgtttgacgcttcagaaacaaaagactatgattttcaccttct 188  Q
    |||||||||||||||||||| ||||| | |||| | |||  ||||||  ||||| |||| || |||||||||||| |||||||    
T  17744966 tttgctaatgcactatacttcaaaggagtatggaaacaaaagtttgatacttcaaaaacgaaggactatgattttgaccttct 17745048  T

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