View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6175_low_2 (Length: 408)
Name: NF6175_low_2
Description: NF6175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6175_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 388
Target Start/End: Original strand, 32721518 - 32721888
Alignment:
| Q |
17 |
atgaatagcaacagcaagcaaaaagatagcaaaaccattcgatgtcaagagcaagtggtgctccagcagagagagctgctaccagtacagatagtggagg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32721518 |
atgaatagcaacagcaagcaaaaagatagcaaaaccattcgatgtcaagagcaagtggtgctccagcagagagagctgctaccagtacagatagtggagg |
32721617 |
T |
|
| Q |
117 |
caaaaacagtcaaatatcattacaagtatgaggaatgaaactgtnnnnnnnnnnnnnnctatctatgaaagacaacaccttttaagaaaacactaatgtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32721618 |
caaaaacagtcaaatatcattacaagtatgaggaatgaaactgtaaaaaaaaaaaaa-ctatctatgaaagacaacaccttttaagaaaacactaatgtt |
32721716 |
T |
|
| Q |
217 |
aacgaatccttctgagaaatatagtattacggatttagaagtaaactaaatgtaataggaacaagcacaacatgtgtaatgctaaacaccaatcctttta |
316 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32721717 |
aacaaatccttctgagaaatatagtattacggatttagaagtaaactaaatgtaataggaacaagcacaacatgtgtaatgctaaacaccaatcctttta |
32721816 |
T |
|
| Q |
317 |
catctatagacagtttcttccagcaacattaataagagtaacatgacaaaaatcgcagcaatagtaaaaatg |
388 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32721817 |
catctatagacagtttcttccagcaacattaataagagtgacatgacaaaaatcgcagcaatagtaaaaatg |
32721888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 388
Target Start/End: Original strand, 32729973 - 32730343
Alignment:
| Q |
17 |
atgaatagcaacagcaagcaaaaagatagcaaaaccattcgatgtcaagagcaagtggtgctccagcagagagagctgctaccagtacagatagtggagg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32729973 |
atgaatagcaacagcaagcaaaaagatagcaaaaccattcgatgtcaagagcaagtggtgctccagcagagagagctgctaccagtacagatagtggagg |
32730072 |
T |
|
| Q |
117 |
caaaaacagtcaaatatcattacaagtatgaggaatgaaactgtnnnnnnnnnnnnnnctatctatgaaagacaacaccttttaagaaaacactaatgtt |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32730073 |
caaaaacagtcaaatatcattacaagtatgaggaatgaaactgtaaaaaaaaaaaaa-ctatctatgaaagacaacaccttttaagaaaacactaatgtt |
32730171 |
T |
|
| Q |
217 |
aacgaatccttctgagaaatatagtattacggatttagaagtaaactaaatgtaataggaacaagcacaacatgtgtaatgctaaacaccaatcctttta |
316 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32730172 |
aacaaatccttctgagaaatatagtattacggatttagaagtaaactaaatgtaataggaacaagcacaacatgtgtaatgctaaacaccaatcctttta |
32730271 |
T |
|
| Q |
317 |
catctatagacagtttcttccagcaacattaataagagtaacatgacaaaaatcgcagcaatagtaaaaatg |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32730272 |
catctatagacagtttcttccagcaacattaataagagtgacatgacaaaaatcgcagcaatagtaaaaatg |
32730343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 386
Target Start/End: Original strand, 32746851 - 32747224
Alignment:
| Q |
5 |
aaaatatgacaaatgaatagcaacagcaagcaaaaagatagcaaaaccattcgatgtcaagagcaagtggtgctccagcagagagagctgctaccagtac |
104 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||| | |||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32746851 |
aaaatatgacaaatgaaaagcaacagcaagcaaaaagatagcaaaatcatccaatgttaagagcaagtggtgctccagcagagagagctgctaccaatac |
32746950 |
T |
|
| Q |
105 |
agatagtggaggcaaaaacagtcaaatatcattacaagtatgaggaatgaaactgtnnnnnnnnnnnnnnctatctatgaaagacaacaccttttaagaa |
204 |
Q |
| |
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||||||| |||||||||| |||||||||| |||||||||||||||| ||| |||| |||||||||||| || ||||||||||||| |
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| T |
32746951 |
agatagttaaggcaaaaacggtcaaatatc-ttacaagtatgaggaaagaagctgtgaaaaaaaat-----tatctatgaaaggcagcaccttttaagaa |
32747044 |
T |
|
| Q |
205 |
aacactaat-gttaacgaatccttctgagaaatatagtattacggatttagaagtaaactaaatgtaataggaacaagcacaacatgtgtaatgctaaac |
303 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||| || || |||| ||||||||| | |||||||||||||||||||||| |
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| T |
32747045 |
aacactaattgttaacgaatctatctgagaaatatagtattacggatttagtag---accaaatataataggaaagaacacaacatgtgtaatgctaaac |
32747141 |
T |
|
| Q |
304 |
accaatccttttacatctatagacagtttcttccagcaacattaataagagtaacatgacaaaaatcgcagcaatagtaaaaa |
386 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
32747142 |
accattccttttacatctataggcagtttcttccaacaacattaataagagcgacgtgacaaaaatcgcagcaatagtaaaaa |
32747224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 176 - 388
Target Start/End: Original strand, 32711145 - 32711343
Alignment:
| Q |
176 |
tatctatgaaagacaacaccttttaagaaaacactaatgttaacgaatccttctgagaaatatagtattacggatttagaagtaaactaaatgtaatagg |
275 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || |||||||||||| |
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| T |
32711145 |
tatctatgaaaggcagcaccttttaagaaaacactaatgttaacgaatctatctgagaaatatagta--------------gtagaccaaatgtaatagg |
32711230 |
T |
|
| Q |
276 |
aacaagcacaacatgtgtaatgctaaacaccaatccttttacatctatagacagtttcttccagcaacattaataagagtaacatgacaaaaatcgcagc |
375 |
Q |
| |
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|| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32711231 |
aaagagcaaaacatgtgtaatgctaaacaccattccttttacatctataggcagtttcttccagcaacattaataagagtgacatgacaaaaatcgcagc |
32711330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32746815 - 32746854
Alignment:
| Q |
1 |
ctacaaaatatgacaaatgaatagcaacagcaagcaaaaa |
40 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| |
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| T |
32746815 |
ctacaaaatatgacaaatgaaaagcaacatcaagcaaaaa |
32746854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 160
Target Start/End: Original strand, 32722709 - 32722806
Alignment:
| Q |
63 |
aagagcaagtggtgctccagcagagagagctgctaccagtacagatagtggaggcaaaaacagtcaaatatcattacaagtatgaggaatgaaactgt |
160 |
Q |
| |
|
||||||||||| |||||||||| ||| |||||| |||| || || ||| |||||||||| ||| || | | |||||| ||||||||| |||||||| |
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|
| T |
32722709 |
aagagcaagtgctgctccagcacagatagctgccaccaacaccgacagtagaggcaaaaatggtcgaaaagcgttacaaatatgaggaaagaaactgt |
32722806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 160
Target Start/End: Original strand, 32731164 - 32731261
Alignment:
| Q |
63 |
aagagcaagtggtgctccagcagagagagctgctaccagtacagatagtggaggcaaaaacagtcaaatatcattacaagtatgaggaatgaaactgt |
160 |
Q |
| |
|
||||||||||| |||||||||| ||| |||||| |||| || || ||| |||||||||| ||| || | | |||||| ||||||||| |||||||| |
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| T |
32731164 |
aagagcaagtgctgctccagcacagatagctgccaccaacaccgacagtagaggcaaaaatggtcgaaaagcgttacaaatatgaggaaagaaactgt |
32731261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 325
Target Start/End: Complemental strand, 3286406 - 3286276
Alignment:
| Q |
195 |
cttttaagaaaacactaatgttaacgaatccttctgagaaatatagtattacggatttagaagtaaactaaatgtaataggaacaagcacaacatgtgta |
294 |
Q |
| |
|
||||||||| |||||| |||||||| ||| | |||||||| |||| |||| |||||| ||||| || ||||||||||||||||||||||| || ||| |
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| T |
3286406 |
cttttaagagaacacttatgttaacaaatttatttgagaaatgtagttttaccgatttaaaagtagaccaaatgtaataggaacaagcacaatttgagta |
3286307 |
T |
|
| Q |
295 |
atgctaaacaccaatccttttacatctatag |
325 |
Q |
| |
|
|| |||||||||| |||||||||||| |||| |
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|
| T |
3286306 |
atactaaacaccattccttttacatcaatag |
3286276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 3286545 - 3286461
Alignment:
| Q |
57 |
gatgtcaagagcaagtggtgctccagcagagagagctgctaccagtacagatagtggaggcaaaaacagtcaaatatcattacaa |
141 |
Q |
| |
|
||||| |||||| ||||||||||| |||||||||||||| |||| ||| |||||||||||||||||| | | |||| |||||||| |
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|
| T |
3286545 |
gatgttaagagcgagtggtgctcctgcagagagagctgcaaccaatactgatagtggaggcaaaaacggccgaatagcattacaa |
3286461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 3282117 - 3282069
Alignment:
| Q |
289 |
tgtgtaatgctaaacaccaatccttttacatctatagacagtttcttcc |
337 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
3282117 |
tgtgtgatgctaaacaccattccttttacatctataggcagtctcttcc |
3282069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 3282350 - 3282253
Alignment:
| Q |
63 |
aagagcaagtggtgctccagcagagagagctgctaccagtacagatagtggaggcaaaaacagtcaaatatcattacaagtatgaggaatgaaactgt |
160 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| || ||||| |||||||||||||| ||| |||| |||| ||| || |||||| ||| |||| |
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| T |
3282350 |
aagagcaagtggtgctccagcacagatagctgccgtcaacacagagagtggaggcaaaaatggtcgaatagcattgcaaataggaggaaagaagctgt |
3282253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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