View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_high_10 (Length: 453)
Name: NF6176_high_10
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 8466632 - 8466743
Alignment:
| Q |
23 |
atgtttaataaacattgcctacgtagaaaacttaaaagttgctgagtattgaaatgtcaccgttcatctcaaagaatgaactttccctgagttaagatgc |
122 |
Q |
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| T |
8466632 |
atgtttaataaacattacctacgtagaaaacttaaaagttgttgagtattgaaatgtcaccggtcatctcaaagaatgaacttttcctgagttaagatgc |
8466731 |
T |
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| Q |
123 |
tcagataaatta |
134 |
Q |
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| T |
8466732 |
tcagataaatta |
8466743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 8467320 - 8467399
Alignment:
| Q |
259 |
tagctgcgagtactacaaagagacttcaggccaaaaaacagttatcatattcacacatactatattacatagtttcagtt |
338 |
Q |
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| T |
8467320 |
tagctgcgagtactacaaagagacttcaggccaaaaaacagttatcatattcacacatactatattacatagtttcagtt |
8467399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 8467399 - 8467475
Alignment:
| Q |
368 |
tgcagcattagcttttctacccctcttattagtagtagacttaatggacttgctcttcttattcacaaccttcttct |
444 |
Q |
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| T |
8467399 |
tgcagcattagcttttctacccctcttattagtagtagacttaatggacttgctcttcttattcacaaccttcttct |
8467475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 8467198 - 8467276
Alignment:
| Q |
165 |
attagtccgcacattctcaatgatacaggaaattcatcccacaatttaaatcagaacaaaaatagcaaaaggatgtctc |
243 |
Q |
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| T |
8467198 |
attagtccgcacattctcaatgatacagaaaattcatcccacaatttaaatcagaacaaaaatagcaaaaggatgtctc |
8467276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 8467152 - 8467190
Alignment:
| Q |
130 |
aattattaatacatgcactttgattgtcacagtgaatta |
168 |
Q |
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| T |
8467152 |
aattattaatacttgcactttgattgtcatagtgaatta |
8467190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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