View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_high_12 (Length: 391)
Name: NF6176_high_12
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 1519248 - 1518914
Alignment:
| Q |
1 |
ggaaggaggagaatgatttagtcttactgcatgcagttttgaagtatgtccttttctttcnnnnnnncttgacaaagtgtcttttaatagatatatagat |
100 |
Q |
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| T |
1519248 |
ggaaggaggagaatgatttagtcttactgcatgcagttttgaagtatgtccttttctttctttttttcttgacaaagtgtcttttaatagatatatagat |
1519149 |
T |
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| Q |
101 |
aattgcattgcatctatccataatgtcnnnnnnnnnnnnnnnctacgtatgttaccttccattttatgtcatttaatgaaaaacgattttgcatgnnnnn |
200 |
Q |
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| T |
1519148 |
aattgcattgcatctatccataatgtctgtgtgtgtgtgtgtctacgtatgttaccttccattttatgtcatttaatgaaaaacgattttgcatgttttt |
1519049 |
T |
|
| Q |
201 |
nnnnnnnngtaatctttataggttatgtaatcctctaacatacatagttcttttctattaaggcatggatatggaaagtggccagatatttttgatgata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1519048 |
gcttttttgtaatctttataggttatgtaatcctctaacatacatagttcttttctattaaggcatggatatggaaagtggccagatattgttgatgata |
1518949 |
T |
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| Q |
301 |
aggatctgaatatgttttctgtatgtcatttggtg |
335 |
Q |
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| T |
1518948 |
aggatctgaatatgttttctgtatgtcatttggtg |
1518914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 225 - 313
Target Start/End: Complemental strand, 2910852 - 2910768
Alignment:
| Q |
225 |
atgtaatcctctaacatacatagttcttttctattaaggcatggatatggaaagtggccagatatttttgatgataaggatctgaatat |
313 |
Q |
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| T |
2910852 |
atgtaatcctctaa----catagttcttttctattaaggcatggatatggaaagtggcatgatattgttgatgataaggatctgaatat |
2910768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2911091 - 2911042
Alignment:
| Q |
1 |
ggaaggaggagaatgatttagtcttactgcatgcagttttgaagtatgtc |
50 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
2911091 |
ggaaggaggagcatgatttagtcttgctgcatgcagttttgaagtatgtc |
2911042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 2910945 - 2910893
Alignment:
| Q |
143 |
ctacgtatgttaccttccattttatgtcatttaatgaaaaacgattttgcatg |
195 |
Q |
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|||||||||| ||| |||||||||| ||||| ||||||||||||||||||||| |
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| T |
2910945 |
ctacgtatgtcaccctccattttatttcattcaatgaaaaacgattttgcatg |
2910893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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