View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6176_high_14 (Length: 358)

Name: NF6176_high_14
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6176_high_14
NF6176_high_14
[»] chr1 (3 HSPs)
chr1 (15-340)||(15885621-15885946)
chr1 (15-340)||(12609921-12610246)
chr1 (15-340)||(12637017-12637339)
[»] scaffold0059 (1 HSPs)
scaffold0059 (86-340)||(62169-62423)
[»] chr6 (2 HSPs)
chr6 (85-340)||(21779829-21780084)
chr6 (223-267)||(12438393-12438437)
[»] chr3 (14 HSPs)
chr3 (133-340)||(22971967-22972174)
chr3 (85-340)||(23145936-23146191)
chr3 (85-294)||(23039103-23039312)
chr3 (144-340)||(22946420-22946616)
chr3 (127-340)||(23036186-23036399)
chr3 (85-340)||(23024288-23024543)
chr3 (85-296)||(23148818-23149029)
chr3 (127-275)||(23032780-23032928)
chr3 (97-340)||(23140062-23140305)
chr3 (173-296)||(23017122-23017245)
chr3 (110-284)||(22941328-22941502)
chr3 (110-254)||(22831937-22832081)
chr3 (155-340)||(22986293-22986478)
chr3 (171-254)||(22916686-22916769)
[»] scaffold0554 (1 HSPs)
scaffold0554 (89-340)||(6487-6738)
[»] chr8 (1 HSPs)
chr8 (110-254)||(5593984-5594128)
[»] chr5 (2 HSPs)
chr5 (217-293)||(41465802-41465878)
chr5 (223-267)||(41654614-41654658)
[»] chr4 (1 HSPs)
chr4 (187-249)||(55955001-55955063)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 340
Target Start/End: Original strand, 15885621 - 15885946
Alignment:
Q  15 gatgaagaaagcacaaactgaagttagagaaatgttcaacgcaaaaggagttgttgatgagaactttcttaatgaactcaaatatttgaagtcaattgtg 114  Q
    ||||||||||||||||  |||||| ||||||||||||||| |||||||| |||||| |||||||| | ||||||| ||||  |||||||||||| |||||    
T  15885621 gatgaagaaagcacaagatgaagtaagagaaatgttcaacacaaaaggaattgttggtgagaactatattaatgagctcacttatttgaagtcagttgtg 15885720  T
Q  115 aaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaaaagta 214  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||| |    
T  15885721 aaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtgaacaagcatgtgagattgatggttatcatataccaaccaaaagca 15885820  T
Q  215 aggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatccggagagattcatcggtagctcttttgatta 314  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||| ||    
T  15885821 aggtgatagtcaatgcatgggcgattggaagagatccaaagtattggactgaaccagagaggttttatccagagagattcattggtagctctattgacta 15885920  T
Q  315 caaagggactaattttgagtacattc 340  Q
     ||||||| |||||||||||||||||    
T  15885921 taaagggaataattttgagtacattc 15885946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 15 - 340
Target Start/End: Complemental strand, 12610246 - 12609921
Alignment:
Q  15 gatgaagaaagcacaaactgaagttagagaaatgttcaacgcaaaaggagttgttgatgagaactttcttaatgaactcaaatatttgaagtcaattgtg 114  Q
    ||||||||||||||||  ||| || ||||| || ||||||   ||||||  |||||| || || | | | ||||||||||  ||||| |||||| |||||    
T  12610246 gatgaagaaagcacaagatgaggtaagagatatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtg 12610147  T
Q  115 aaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaaaagta 214  Q
    |||||||| ||||||||||| ||||||| |||||||||| ||||||||||||||  ||||||||||||||||||||| |||| ||||||||||||||| |    
T  12610146 aaagagaccttaaggttacatcctccaggtcctcttttacttccaagagaatgtggacaagcatgtgagattgatgggtatcgtataccaatcaaaagca 12610047  T
Q  215 aggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatccggagagattcatcggtagctcttttgatta 314  Q
    |||||||||| ||||||||||| |||||||||||| ||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||    
T  12610046 aggtgatagtcaatgcatgggcgattggaagagatccaaagtactggactgaaccagagaagttttatccggagagattcatcggtagctctattgacta 12609947  T
Q  315 caaagggactaattttgagtacattc 340  Q
    |||||||| |||||||||||||||||    
T  12609946 caaagggaataattttgagtacattc 12609921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 15 - 340
Target Start/End: Complemental strand, 12637339 - 12637017
Alignment:
Q  15 gatgaagaaagcacaaactgaagttagagaaatgttcaacgcaaaaggagttgttgatgagaactttcttaatgaactcaaatatttgaagtcaattgtg 114  Q
    ||||||||||||||||  |||||| ||| |||| ||||||   ||||||  ||||| ||| |||| | | ||||||||| |||||||||||| | | |||    
T  12637339 gatgaagaaagcacaatatgaagtgagaaaaatattcaacaagaaaggaactgttggtgaaaactatataaatgaactcgaatatttgaagttagtagtg 12637240  T
Q  115 aaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaaaagta 214  Q
    ||||||||  ||||||||||||||||| ||||||||||| ||   |||||||||  |||||||||||| ||||| || ||||||||||||  ||||||||    
T  12637239 aaagagactctaaggttacaccctccaactcctcttttactt---agagaatgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagta 12637143  T
Q  215 aggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatccggagagattcatcggtagctcttttgatta 314  Q
    |||||||||| ||||||||| ||||||| |||||| ||||||| ||||||||||| ||||||||| |||| ||||||||||| ||||||||| |||| ||    
T  12637142 aggtgatagtaaatgcatggacaattggtagagatccaaagtactggactgaaccagagaggtttcatccagagagattcattggtagctctattgacta 12637043  T
Q  315 caaagggactaattttgagtacattc 340  Q
    |||||| | |||||||||||||||||    
T  12637042 caaaggaaataattttgagtacattc 12637017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 86 - 340
Target Start/End: Complemental strand, 62423 - 62169
Alignment:
Q  86 atgaactcaaatatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagat 185  Q
    |||||||||||||  ||||||||||||||||||||||  | ||||||||||| |||| | |||||||| ||||||||||||||| | |||||||||||||    
T  62423 atgaactcaaatacgtgaagtcaattgtgaaagagaccctgaggttacaccccccaggtgctcttttacttccaagagaatgtagagaagcatgtgagat 62324  T
Q  186 tgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatccg 285  Q
    |||||| |||||||||||||| ||||  ||| ||||||| |||||||||||||| ||||||||| ||| ||| ||||| ||||| ||||||||||||||     
T  62323 tgatgggtatcatataccaatgaaaacaaagctgatagttaatgcatgggcaatcggaagagatccaaggtactggacggaaccagagaggttttatcca 62224  T
Q  286 gagagattcatcggtagctcttttgattacaaagggactaattttgagtacattc 340  Q
    ||||||||||| ||||| ||| |||| ||||| |||| |||||| ||||||||||    
T  62223 gagagattcattggtagttctattgactacaacgggaataatttcgagtacattc 62169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 85 - 340
Target Start/End: Complemental strand, 21780084 - 21779829
Alignment:
Q  85 aatgaactcaaatatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgaga 184  Q
    ||||||||||| |||||||| ||| |||| ||||| || |||||| ||||||||||||| ||||||||  | || ||||||||||  ||||||||||| |    
T  21780084 aatgaactcaattatttgaaatcagttgtcaaagaaaccttaaggctacaccctccagcacctcttttgttaccgagagaatgtagtcaagcatgtgata 21779985  T
Q  185 ttgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatcc 284  Q
    |  |||| || || || || || || | |||||||||| | ||||| |||||||||| ||||||| |||| || ||||||||||| |||| |||||||||    
T  21779984 taaatggttaccacattccgattaagactaaggtgataatcaatgcttgggcaattgcaagagatccaaactactggactgaaccagagatgttttatcc 21779885  T
Q  285 ggagagattcatcggtagctcttttgattacaaagggactaattttgagtacattc 340  Q
     ||||||||||||| ||||  | |||| |  ||||||| |||||||||||||||||    
T  21779884 agagagattcatcgatagcgatattgactttaaagggagtaattttgagtacattc 21779829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 12438437 - 12438393
Alignment:
Q  223 gtgaatgcatgggcaattggaagagattcaaagtattggactgaa 267  Q
    ||||||||||||||||||||||||||  |||||||||||| ||||    
T  12438437 gtgaatgcatgggcaattggaagagacccaaagtattggaatgaa 12438393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 133 - 340
Target Start/End: Complemental strand, 22972174 - 22971967
Alignment:
Q  133 caccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcat 232  Q
    |||||||| | |||||||||||| ||||| |  |||  |||||| |||||||||||||| ||||| |||||||||||||||| ||||||| | ||||| |    
T  22972174 caccctcctggtcctcttttagtaccaagggtgtgtggacaagcttgtgagattgatggttatcacataccaatcaaaagtagggtgataatcaatgctt 22972075  T
Q  233 gggcaattggaagagattcaaagtattggactgaacctgagaggttttatccggagagattcatcggtagctcttttgattacaaagggactaattttga 332  Q
    ||||||||||||| ||| |||| ||||||||||| || || | ||||||||| || ||||| || | ||| ||| |||||| |||||| || ||||||||    
T  22972074 gggcaattggaagggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctcttgatttcaaaggaacaaattttga 22971975  T
Q  333 gtacattc 340  Q
    ||||||||    
T  22971974 gtacattc 22971967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 85 - 340
Target Start/End: Complemental strand, 23146191 - 23145936
Alignment:
Q  85 aatgaactcaaatatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgaga 184  Q
    ||||||||||| |||||||| | | |||| ||||| || |||||| ||||||||||||| ||||||||  | || ||||||||||  |||| |||||| |    
T  23146191 aatgaactcaattatttgaaattagttgtcaaagaaaccttaaggctacaccctccagcacctcttttgttaccgagagaatgtagtcaagaatgtgata 23146092  T
Q  185 ttgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatcc 284  Q
    |  |||| ||||| ||||| || || | ||||||| |||| ||||| |||||| ||| ||||||| |||| || ||||||||||| ||||||||||||||    
T  23146091 taaatggttatcacataccgattaagactaaggtgttagtcaatgcttgggcagttgcaagagatccaaactactggactgaaccagagaggttttatcc 23145992  T
Q  285 ggagagattcatcggtagctcttttgattacaaagggactaattttgagtacattc 340  Q
     |||||||||||||  |||  | |||| || ||||||| ||| |||||||||||||    
T  23145991 agagagattcatcgacagcgatattgactataaagggagtaactttgagtacattc 23145936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 85 - 294
Target Start/End: Complemental strand, 23039312 - 23039103
Alignment:
Q  85 aatgaactcaaatatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgaga 184  Q
    ||||||||||| |||||||||||| |||| ||||| ||  | ||||||||||||||| | ||||||||  | ||||||||||||   ||| |||||||||    
T  23039312 aatgaactcaattatttgaagtcagttgtcaaagaaaccctgaggttacaccctccaacacctcttttgctgccaagagaatgtcgtcaaacatgtgaga 23039213  T
Q  185 ttgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatcc 284  Q
    |  |||| ||||| ||||| || || |||||||||||||| ||||| |||||||||| ||||||| |||| || |||||||| || ||||| ||||||||    
T  23039212 taaatggttatcacatacctattaagagtaaggtgatagtcaatgcttgggcaattgcaagagatccaaattactggactgagccggagagattttatcc 23039113  T
Q  285 ggagagattc 294  Q
     |||||||||    
T  23039112 agagagattc 23039103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 144 - 340
Target Start/End: Complemental strand, 22946616 - 22946420
Alignment:
Q  144 tcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattgga 243  Q
    |||||||||| |||| || |  ||| |||||||||||||||||||||| ||||| ||||||||||| |||| ||||||| | ||||| ||||||||||||    
T  22946616 tcctcttttaattcctagggtgtgtgcacaagcatgtgagattgatggttatcacataccaatcaatagtagggtgataatcaatgcttgggcaattgga 22946517  T
Q  244 agagattcaaagtattggactgaacctgagaggttttatccggagagattcatcggtagctcttttgattacaaagggactaattttgagtacattc 340  Q
    || ||| |||| ||||||||||| || || | ||||||||| || ||||| || | ||| ||| |||||| |||||| || ||||||||||||||||    
T  22946516 agggatccaaaatattggactgatccagataagttttatcctgaaagatttattgatagttctgttgatttcaaaggaacaaattttgagtacattc 22946420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 127 - 340
Target Start/End: Complemental strand, 23036399 - 23036186
Alignment:
Q  127 aggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaaaagtaaggtgatagtga 226  Q
    ||||||||||||||| | ||||||||  | |||||||| |||   |||||||||| |||  |||| ||||| ||||| || || |||||||| | | | |    
T  23036399 aggttacaccctccaacacctcttttgctaccaagagagtgtgttcaagcatgtgtgataaatggttatcacatacctattaagagtaaggtaacaataa 23036300  T
Q  227 atgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatccggagagattcatcggtagctcttttgattacaaagggactaa 326  Q
    |||| |||||||||| ||||||| |||| || ||||||||||| ||||| |||||||| |||||||||||||  ||| || |||| |||||||||| |||    
T  23036299 atgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgactacaaagggagtaa 23036200  T
Q  327 ttttgagtacattc 340  Q
     |||||||||||||    
T  23036199 ctttgagtacattc 23036186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 85 - 340
Target Start/End: Complemental strand, 23024543 - 23024288
Alignment:
Q  85 aatgaactcaaatatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgaga 184  Q
    |||||||| || |||||||| |||||||| ||||| ||  | |||||||||||||| || || |||||| | || ||||||||| | ||| ||||| |||    
T  23024543 aatgaacttaattatttgaaatcaattgtcaaagaaaccctgaggttacaccctccggcaccacttttaataccgagagaatgtgctcaatcatgtaaga 23024444  T
Q  185 ttgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatcc 284  Q
    | || || ||| | || ||||  || | |||||||||||| ||||| |||||||||| ||||||| |||| || ||||| ||||| ||||||||||||||    
T  23024443 tagacggttatgacattccaactaagactaaggtgatagtcaatgcttgggcaattgcaagagatccaaattactggaccgaaccagagaggttttatcc 23024344  T
Q  285 ggagagattcatcggtagctcttttgattacaaagggactaattttgagtacattc 340  Q
     ||||||||||||| |||   | |||| || ||||||| ||| |||||||| ||||    
T  23024343 agagagattcatcgatagtgatattgactataaagggagtaactttgagtatattc 23024288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 85 - 296
Target Start/End: Complemental strand, 23149029 - 23148818
Alignment:
Q  85 aatgaactcaaatatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgaga 184  Q
    ||||||||||| |||||||| | | |||| ||||| || |||||| |||||||||| || ||||||||  | || ||||||||||  ||||| ||||| |    
T  23149029 aatgaactcaattatttgaaattagttgtcaaagaaaccttaaggctacaccctccggcacctcttttgttaccgagagaatgtagtcaagcgtgtgata 23148930  T
Q  185 ttgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatcc 284  Q
    |  |||| ||||| || || || || | ||| |||||| | ||||| |||||||||| |||||||||||| || ||||||||||| ||||||||||||||    
T  23148929 taaatggttatcacattccgattaagactaaagtgataatcaatgcttgggcaattgcaagagattcaaactactggactgaaccagagaggttttatcc 23148830  T
Q  285 ggagagattcat 296  Q
     |||||||||||    
T  23148829 agagagattcat 23148818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 275
Target Start/End: Complemental strand, 23032928 - 23032780
Alignment:
Q  127 aggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaaaagtaaggtgatagtga 226  Q
    ||||| |||||| |||  ||||||||  | |||||||||||    ||||||||||||||  |||| ||||| |||||||| ||||||||||||||||| |    
T  23032928 aggttccaccctacagtacctcttttgctaccaagagaatgcggtcaagcatgtgagataaatggttatcacataccaattaaaagtaaggtgatagtca 23032829  T
Q  227 atgcatgggcaattggaagagattcaaagtattggactgaacctgagag 275  Q
    |||| |||||||||| ||||||| |||| || ||||||||||| |||||    
T  23032828 atgcttgggcaattgcaagagatccaaactactggactgaaccagagag 23032780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 97 - 340
Target Start/End: Complemental strand, 23140305 - 23140062
Alignment:
Q  97 tatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatc 196  Q
    |||||||| ||||| || ||||| || || ||||||||| |||| |  ||||||||  | |||||||| |||   ||||||||||||||  |||| ||||    
T  23140305 tatttgaaatcaatcgtcaaagaaaccttgaggttacacactccggtgcctcttttgctaccaagagagtgtggtcaagcatgtgagatacatggttatc 23140206  T
Q  197 atataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatccggagagattcat 296  Q
    | |||||| | || | ||||||| | || |||||||||||||| |  |||||| |||| || ||||||||||| ||||  |||||||| |||||||||||    
T  23140205 acataccatttaagactaaggtggtcgtcaatgcatgggcaatcgcgagagatccaaactactggactgaaccagagaaattttatccagagagattcat 23140106  T
Q  297 cggtagctcttttgattacaaagggactaattttgagtacattc 340  Q
     || | | || |||| || ||||||| | |||||||||||||||    
T  23140105 gggaaacactattgactataaagggagtgattttgagtacattc 23140062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 296
Target Start/End: Complemental strand, 23017245 - 23017122
Alignment:
Q  173 aagcatgtgagattgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctga 272  Q
    |||||||||||||  |||| ||||| |||||| | || | |||||||||| | ||||| |||||||| | ||||||| |||| || ||||||||||| ||    
T  23017245 aagcatgtgagatacatggttatcacataccagttaagactaaggtgataattaatgcttgggcaatcgcaagagatccaaactactggactgaaccaga 23017146  T
Q  273 gaggttttatccggagagattcat 296  Q
    || ||||||||| |||||||||||    
T  23017145 gaagttttatccagagagattcat 23017122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 110 - 284
Target Start/End: Original strand, 22941328 - 22941502
Alignment:
Q  110 ttgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaa 209  Q
    ||||||||||||| || || || |||||||| ||| |  ||||  ||||||||||||||  |||||||||||| ||  |||| ||| |||||||  | ||    
T  22941328 ttgtgaaagagacattgagattgcaccctcctgctgcatttttgcttccaagagaatgtggacaagcatgtgaaataaatgggtatgatataccttttaa 22941427  T
Q  210 aagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatcc 284  Q
    ||| || |||||||||||||| ||||| |||||||||||| ||||  |||||  ||| || ||||| ||||||||    
T  22941428 aagcaaagtgatagtgaatgcttgggccattggaagagatccaaatcattgggatgacccagagagattttatcc 22941502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 254
Target Start/End: Complemental strand, 22832081 - 22831937
Alignment:
Q  110 ttgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaa 209  Q
    ||||||||||||| || || |||||||||||  |  |  ||||  ||||||||||||||  | |||||||||||||  |||| ||| |||||||  | ||    
T  22832081 ttgtgaaagagacattgagattacaccctccgtcaacatttttgcttccaagagaatgtggaaaagcatgtgagataaatgggtatgatataccttttaa 22831982  T
Q  210 aagtaaggtgatagtgaatgcatgggcaattggaagagattcaaa 254  Q
    ||| || |||||||||||||| ||||| |||||||||||| ||||    
T  22831981 aagcaaagtgatagtgaatgcttgggctattggaagagatccaaa 22831937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 340
Target Start/End: Complemental strand, 22986478 - 22986293
Alignment:
Q  155 ttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaa 254  Q
    |||||||||| |||  |||||| ||||||||| |||| ||| | |||||  | |||||||  ||  | || ||||| ||||| |||||| | ||| | ||    
T  22986478 ttccaagagagtgtggacaagcttgtgagattaatggttattacatacctgtaaaaagtagagtcctcgttaatgcttgggccattggacgggatcctaa 22986379  T
Q  255 gtattggactgaacctgagaggttttatccggagagattcatcggtagctcttttgattacaaagggactaattttgagtacattc 340  Q
     ||||||| ||| || || | ||||||||| ||||| || || | ||| ||| |||||| |||||| |||||||||||||||||||    
T  22986378 atattggaatgaccccgataagttttatcctgagaggtttattgatagttctattgatttcaaaggaactaattttgagtacattc 22986293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 22916686 - 22916769
Alignment:
Q  171 acaagcatgtgagattgatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaa 254  Q
    |||||||||||| ||  |||| |||  ||||||| | ||||| || |||||||||||||| ||||| |||||||||||| ||||    
T  22916686 acaagcatgtgaaataaatgggtatggtataccatttaaaagcaaagtgatagtgaatgcttgggccattggaagagatccaaa 22916769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 340
Target Start/End: Original strand, 6487 - 6738
Alignment:
Q  89 aactcaaatatttgaagtcaattgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattga 188  Q
    ||||||| |||||||| ||| | || ||||| ||  | ||||||||||||||||| ||||||||  | ||||||||||||    |||||||||||||  |    
T  6487 aactcaattatttgaaatcagtcgtcaaagaaacccttaggttacaccctccagcacctcttttgctaccaagagaatgtggtaaagcatgtgagataaa 6586  T
Q  189 tggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatccggag 288  Q
    ||| ||| | |||||  | |  |||||||||||| | ||||| |||||||||| ||||||| |||| |  ||||||||||| |||||||||||||| |||    
T  6587 tggttataacataccgtttaggagtaaggtgataatcaatgcttgggcaattgcaagagatccaaacttctggactgaaccagagaggttttatccagag 6686  T
Q  289 agattcatcggtagctcttttgattacaaagggactaattttgagtacattc 340  Q
    |||||||  |  ||| || |||| || ||||||  |||||||||||||||||    
T  6687 agattcactgacagcactattgactataaagggggtaattttgagtacattc 6738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 254
Target Start/End: Original strand, 5593984 - 5594128
Alignment:
Q  110 ttgtgaaagagacgttaaggttacaccctccagctcctcttttagttccaagagaatgtacacaagcatgtgagattgatggatatcatataccaatcaa 209  Q
    ||||||||||||| || || |||||||||||  |  |  ||||  ||||||||||||||  | |||||||||||||  |||| ||| |||||||  | ||    
T  5593984 ttgtgaaagagacattgagattacaccctccgtcaacatttttgcttccaagagaatgtggaaaagcatgtgagataaatgggtatgatataccttttaa 5594083  T
Q  210 aagtaaggtgatagtgaatgcatgggcaattggaagagattcaaa 254  Q
    ||| || |||||||||||||| ||||| |||||||||||| ||||    
T  5594084 aagcaaagtgatagtgaatgcttgggctattggaagagatccaaa 5594128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 293
Target Start/End: Original strand, 41465802 - 41465878
Alignment:
Q  217 gtgatagtgaatgcatgggcaattggaagagattcaaagtattggactgaacctgagaggttttatccggagagatt 293  Q
    |||||||| ||||||||||| |||||||||||| |||||||||||| |||||| || | ||||  ||||||||||||    
T  41465802 gtgatagtaaatgcatgggcgattggaagagatccaaagtattggagtgaaccggaaaagtttattccggagagatt 41465878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 41654614 - 41654658
Alignment:
Q  223 gtgaatgcatgggcaattggaagagattcaaagtattggactgaa 267  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||    
T  41654614 gtgaatgcatgggcaattggaagagaccaaaagtattggattgaa 41654658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 55955063 - 55955001
Alignment:
Q  187 gatggatatcatataccaatcaaaagtaaggtgatagtgaatgcatgggcaattggaagagat 249  Q
    ||||||||| | |||||||| || | ||  |||||||| ||||||||||||||||||||||||    
T  55955063 gatggatatgaaataccaataaagactagcgtgatagtaaatgcatgggcaattggaagagat 55955001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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