View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6176_high_17 (Length: 324)
Name: NF6176_high_17
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 13897815 - 13898114
Alignment:
| Q |
20 |
aaaccggcatgacaaatcgaaacaaagtagcttctgttgcatcctcaaaagctgcagcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13897815 |
aaaccggcatgacaaatcgaaacaaagtagcttctgttgcatcctcaaaagctgcagcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatc |
13897914 |
T |
|
| Q |
120 |
aacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatctattgcaacatttttcttcaatgatgattctaagaca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13897915 |
aacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatctattgcaacatttttcttcaatgatgattctaagaca |
13898014 |
T |
|
| Q |
220 |
ggtatgagcctattgttcacaagctcaaaaattgactcaattgttaacttcctaaaatttgtcgaatgaaactcgatactcgctattttcctttgcttct |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13898015 |
ggtatgagcctattgttcacaagctcaaaaattgacttaattgttaacttcctaaaatttgtcgaatgaaactcgatactcgctattttcctttgtttct |
13898114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 30 - 319
Target Start/End: Complemental strand, 13887379 - 13887090
Alignment:
| Q |
30 |
gacaaatcgaaacaaagtagcttctgttgcatcctcaaaagctgcagcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaa |
129 |
Q |
| |
|
||||||||||| |||||| ||||| |||||||| ||||||||| ||||| || |||||||| |||||| |||| |||||| |||||||||| ||||| |
|
|
| T |
13887379 |
gacaaatcgaagcaaagttgcttcggttgcatcttcaaaagctcttgcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaa |
13887280 |
T |
|
| Q |
130 |
gctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatctattgcaacatttttcttcaatgatgattctaagacaggtatgagcc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
13887279 |
gctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggtatgagcc |
13887180 |
T |
|
| Q |
230 |
tattgttcacaagctcaaaaattgactcaattgttaacttcctaaaatttgtcgaatgaaactcgatactcgctattttcctttgcttct |
319 |
Q |
| |
|
||||||||||||||||||| | ||| ||| ||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
13887179 |
tattgttcacaagctcaaacaatgaatcagttgttaatttcctaaactttgttgaatgaaactcgatactcgctgttttcctttgtttct |
13887090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 7295876 - 7295946
Alignment:
| Q |
76 |
gcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacatt |
146 |
Q |
| |
|
||||| || |||||| |||||| |||||| |||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
7295876 |
gcaaatggtatttcaaacaaatgtggttgtgaacaaccaggatcaacaccaaaagatatcatgcaaacatt |
7295946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 24 - 319
Target Start/End: Original strand, 1034876 - 1035171
Alignment:
| Q |
24 |
cggcatgacaaatcgaaacaaagtagcttctgttgcatcctcaaaagctgcagcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaaca |
123 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1034876 |
cggcacgacaaatcgaaacaaaatagcttctgttgcatcctcaaaagctcctgcaaagggaatttcaggcaaatgaggttgtaagcaaccaggatcaaca |
1034975 |
T |
|
| Q |
124 |
ccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatctattgcaacatttttcttcaatgatgattctaagacaggta |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
1034976 |
ccaaaagctatcatacaaacattatcaaaagttagtctcagcaaaatatcttgaagatctatggcaacatttttcttcaatgataattctaagactggta |
1035075 |
T |
|
| Q |
224 |
tgagcctattgttcacaagctcaaaaattgactcaattgttaacttcctaaaatttgtcgaatgaaactcgatactcgctattttcctttgcttct |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
1035076 |
tgagcctattgttcacaagctcaaaaattgactcatttgttaactttctaaaatttgtcgaatgaaactcgatactagctattttcctttgtttct |
1035171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 28667238 - 28667315
Alignment:
| Q |
106 |
aaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatct |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||| |||||||||||| |
|
|
| T |
28667238 |
aaacaaccaggatcaacaccaaaagctatcatacaaacattgtcaaaagttagtcttaaaagaatgtcttgaagatct |
28667315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University