View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_high_25 (Length: 256)
Name: NF6176_high_25
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 5939549 - 5939778
Alignment:
| Q |
9 |
tataattctgcaattgtctttttggtattgccttctattacaattttttgtaactcttaatgataaatttgacgtagatttattaaatttgacgtagaga |
108 |
Q |
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| T |
5939549 |
tataattctgtaattgtctttttggtattgccttctattacaattatatgtaactcttaatgataaatttgacgtagatttattaaatttgacgtagaga |
5939648 |
T |
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| Q |
109 |
gaatggaatttcttagtttatgccatgtccaatgtcaattattgtgttctatttggtttataagaggtaagaactagattatacaagttccactattaaa |
208 |
Q |
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| T |
5939649 |
gaatggaatttcttagtttatgctatatccaatgtcaattattgtgttctatttggtttataagaggtaagaactagattatacaagttccactattaaa |
5939748 |
T |
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| Q |
209 |
gaaggatgacgagaagtgaaattcttttcc |
238 |
Q |
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| T |
5939749 |
gaaggatgacgaaaagtgaaattcttttcc |
5939778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 85 - 238
Target Start/End: Original strand, 5973523 - 5973676
Alignment:
| Q |
85 |
gatttattaaatttgacgtagagagaatggaatttcttagtttatgccatgtccaatgtcaattattgtgttctatttggtttataagaggtaagaacta |
184 |
Q |
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| T |
5973523 |
gatttactaaatttgacgtagagggaatggaatttcttagtttaagccatgtccaatgtcaattattgtattctattaggtttattagaggtaagaaccg |
5973622 |
T |
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| Q |
185 |
gattatacaagttccactattaaagaaggatgacgagaagtgaaattcttttcc |
238 |
Q |
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| T |
5973623 |
gatcatacaagttccattattgaagaaggatgatgtgaagagaaattcttttcc |
5973676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 200
Target Start/End: Original strand, 5910997 - 5911112
Alignment:
| Q |
85 |
gatttattaaatttgacgtagagagaatggaatttcttagtttatgccatgtccaatgtcaattattgtgttctatttggtttataagaggtaagaacta |
184 |
Q |
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|||||| ||| ||||| || |||||||||||||||||| ||||| |||||||||||||| | || || | | || | | ||||| ||||||||||||| |
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| T |
5910997 |
gatttactaagtttgaagtggagagaatggaatttctttgtttaagccatgtccaatgttagttcttatatattagtagttttattagaggtaagaactg |
5911096 |
T |
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| Q |
185 |
gattatacaagttcca |
200 |
Q |
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| T |
5911097 |
gttcatacaagttcca |
5911112 |
T |
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