View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_high_7 (Length: 519)
Name: NF6176_high_7
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 502
Target Start/End: Original strand, 48080810 - 48081305
Alignment:
| Q |
8 |
gagaagaacacggggtagcatgtttagaatttaggtttttattttacatgtacttttaacatttccttgtgattatgggtttaagagacttagcactcat |
107 |
Q |
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| T |
48080810 |
gagaagaacatggggtagcatgtttagaatttaggtttttattttacatgtacttttaatatttccttgtgattatgggtttaagagacttagcactcat |
48080909 |
T |
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| Q |
108 |
gggtgggtacacttgaagaattggagctaaagaaatcaataaaattggaaagtgtacaaaaggataagcgagc------accaaatatgcaacgatctag |
201 |
Q |
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| T |
48080910 |
gggtgggtacacttgaagaattggagctaaagaaatcaataaaattggaaagtgtacaaaaggataagcgagcgcgagcaccaaatatgcaacga----g |
48081005 |
T |
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| Q |
202 |
tgcttataattatggacgaagaagaaataattatatgcatcaatactcttttctgctgtaaaatgacaggaaagaaaatctatataattacaannnnnnn |
301 |
Q |
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| T |
48081006 |
tgcttataattatggacgaagaagaaataattatatgcatcaatactcttttctgttgtaaaatgacaggaaagaaaatctatataattacaatttttat |
48081105 |
T |
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| Q |
302 |
nnnnnnnngaaaaatacatgatacacgtagatacctcataactcggcaaatatatttcatctatcggatatctgcaaagatatagagcgaacacaaatat |
401 |
Q |
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| T |
48081106 |
ttttttt-gaaaaatacatgatacacgtagatacctcataactcgtcaaatatattccatctatcggatatctgcaaagatatagagcgaacacaaatat |
48081204 |
T |
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| Q |
402 |
cgtttttatgcaacagtgtcaactgccaacaaatgactacaaaaattagtgacactggaggagggtagctgtgacgaataccatggtatttatgttgaac |
501 |
Q |
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| T |
48081205 |
cgtttttatgcaacagtgtcaactgccaacaaatgactacaaaaattagtgacactggaggagggtagctgtgacgaataccatggtatttatgttgaac |
48081304 |
T |
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