View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_high_8 (Length: 482)
Name: NF6176_high_8
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Original strand, 17069907 - 17070360
Alignment:
| Q |
19 |
cttaattcccgtgattttggcaaaag-gtctaatatggatttctatttcctatttctcaaatgaatgtaaatctgaaattggaaggatttttagatgtgg |
117 |
Q |
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| T |
17069907 |
cttaattcccgtgattttgaaaaaagagtctaatatggatttctatttcctatttctcaaatgaatgtaaatctgaaattggaaggatttttagatgtgg |
17070006 |
T |
|
| Q |
118 |
attgatgtgaggtcaaagtggatagaaggagcacaattggttacttttcaaacttaagggtgcaacaaagtcatggtgcaccaaaaagcaatttatgatt |
217 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17070007 |
attggtgtgaggtcaaagtggatacttcgagcacaattggttacttttcaaacttaagggtgcaacaaagtcatggtgcaccaaaaagcaatttatgatt |
17070106 |
T |
|
| Q |
218 |
gctctatcaagctgtgaggcagaatatgttgccgggtcattggttttttggcaagcaaactggctgccgtgcagcagtcactgatgattgagttgaagat |
317 |
Q |
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| T |
17070107 |
gctctatcaagctgtgaggcagaatatgttgccgggtcattggtttcttggcaagcaaactggctgcagtgctgcagtcactgatgattgagttgaagat |
17070206 |
T |
|
| Q |
318 |
aggtgatgaagttgcagtcaagctgaagagtgataacaagtctgcaatcaacttagctaagaattctatcttccatggcaagagaaaacacgtagagaca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17070207 |
aggtgatgaagttgcagtcaagctgaagagtgataacaagtctgcaatcaacttagctaagaattctatcttccatggcaagagaaaacacgtagagaca |
17070306 |
T |
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| Q |
418 |
aggtttcatttcatgagggatcaagtcaacaagaacgagctaattcttgagtat |
471 |
Q |
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| T |
17070307 |
aggttccatttcatgagggatcaagtcaacaagaacgagctaattgttgagtat |
17070360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Complemental strand, 17578366 - 17577913
Alignment:
| Q |
19 |
cttaattcccgtgattttggcaaaag-gtctaatatggatttctatttcctatttctcaaatgaatgtaaatctgaaattggaaggatttttagatgtgg |
117 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17578366 |
cttaattcccgtgattttgaaaaaagagtctaatatggatttctatttcctatttctcaaatgaatgtaaatctgaaattggaaggatttttagatgtgg |
17578267 |
T |
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| Q |
118 |
attgatgtgaggtcaaagtggatagaaggagcacaattggttacttttcaaacttaagggtgcaacaaagtcatggtgcaccaaaaagcaatttatgatt |
217 |
Q |
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| T |
17578266 |
attggtgtgaggtcaaagtggatacttcgagcacaattggttacttttcaaacttaagggtgcaacaaagtcatggtgcaccaaaaagcaatttatgatt |
17578167 |
T |
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| Q |
218 |
gctctatcaagctgtgaggcagaatatgttgccgggtcattggttttttggcaagcaaactggctgccgtgcagcagtcactgatgattgagttgaagat |
317 |
Q |
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| T |
17578166 |
gctctatcaagctgtgaggcagaatatgttgccgggtcattggtttcttggcaagcaaactggctgcagtgctgcagtcactgatgattgagttgaagat |
17578067 |
T |
|
| Q |
318 |
aggtgatgaagttgcagtcaagctgaagagtgataacaagtctgcaatcaacttagctaagaattctatcttccatggcaagagaaaacacgtagagaca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17578066 |
aggtgatgaagttgcagtcaagctgaagagtgataacaagtctgcaatcaacttagctaagaattctatcttccatggcaagagaaaacacgtagagaca |
17577967 |
T |
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| Q |
418 |
aggtttcatttcatgagggatcaagtcaacaagaacgagctaattcttgagtat |
471 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17577966 |
aggttccatttcatgagggatcaagtcaacaagaacgagctaattgttgagtat |
17577913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 49 - 471
Target Start/End: Original strand, 29355158 - 29355579
Alignment:
| Q |
49 |
aatatggatttctatttcctatttctcaaatgaatgtaaatctgaaattggaaggatttttagatgtggattgatgtgaggtcaaagtggataga--agg |
146 |
Q |
| |
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|||||||| | |||||||||||||||||||||| || || || ||||||||||||||||||||| ||||| | | | | |||| || ||| ||| |
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| T |
29355158 |
aatatggaatactatttcctatttctcaaatgactgagaaattggaattggaaggatttttagatgatgattggtacggagacgaagtagagagagaagg |
29355257 |
T |
|
| Q |
147 |
agcacaattggttactt-ttcaaacttaagggtgcaacaaagtcatggtgcaccaaaaagcaatttatgattgctctatcaagctgtgaggcagaatatg |
245 |
Q |
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|| |||| ||||||||| ||||| ||| | |||||| ||| || ||||| |||||||| ||| | ||||||||||||| ||||||||| ||||||||| |
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| T |
29355258 |
agtacaagtggttacttgttcaagcttcatggtgcaccaatctcttggtgttccaaaaagaaatatgtgattgctctatctagctgtgagacagaatatg |
29355357 |
T |
|
| Q |
246 |
ttgccgggtcattggttttttggcaagcaaactggctgccgtgcagcagtcactgatgattgagttgaagataggtgatgaagttgcagtcaagct-gaa |
344 |
Q |
| |
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||| ||||||||||||| ||| |||| ||||| ||| ||| || |||||| ||||| |||||||| ||||| ||||| ||||||||| ||| |
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| T |
29355358 |
ttgtcgggtcattggttacttgtcaagaaaactagct--------gcaatccctgatgtttgagctgaagataagtgataaagttctagtcaagctggaa |
29355449 |
T |
|
| Q |
345 |
gagtgataaca---agtctgcaatcaacttagctaagaattctatcttccatggcaagagaaaacacgtagagacaaggtttcatttcatgagggatcaa |
441 |
Q |
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| |||||||| | | ||| || ||||||| ||||||| ||||||||||||||||||| |||| |||| |||||| ||||||| |||| |||||| |
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| T |
29355450 |
tattgataacaaataatttgctattaacttagttaagaatcctatcttccatggcaagagtaaacgtatagaaacaaggcttcattttctgagcgatcaa |
29355549 |
T |
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| Q |
442 |
gtcaacaagaacgagctaattcttgagtat |
471 |
Q |
| |
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|||||||||||| ||||| | |||||||| |
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| T |
29355550 |
gtcaacaagaacacgctaagtgttgagtat |
29355579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 469
Target Start/End: Complemental strand, 40741054 - 40740877
Alignment:
| Q |
291 |
gcagtcactgatgattgagttgaagataggtgatgaagttgcagtcaagctgaagagtgataacaagtctgcaatcaacttagctaagaattctatcttc |
390 |
Q |
| |
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||||||| |||||||||| ||| |||| ||||||| ||| |||||| || |||| |||||||||||||||||||||||||| ||||||| | |||| | |
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| T |
40741054 |
gcagtcattgatgattgaactgaggatatgtgatgaggttccagtcagactaaagattgataacaagtctgcaatcaacttagttaagaatcccatctgc |
40740955 |
T |
|
| Q |
391 |
catggcaagagaaaacacgtagagacaaggtttcatttcatgagggatcaagtcaacaagaacgagctaattcttgagt |
469 |
Q |
| |
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|||||||||| |||||| |||| || | ||| ||||| | | |||||||||||| |||||| |||||| | |||||| |
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| T |
40740954 |
catggcaagattaaacacatagaaacga-gttccattttcttaaggatcaagtcaataagaacaagctaagtgttgagt |
40740877 |
T |
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