View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_high_9 (Length: 465)
Name: NF6176_high_9
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_high_9 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 5 - 448
Target Start/End: Complemental strand, 11524 - 11080
Alignment:
| Q |
5 |
ggagtagcata-gggccccatatatcagcatgtaacaaatcaaaaatgttattagaatgagtaacactattaggataaggaagaactctttgtttggaaa |
103 |
Q |
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| T |
11524 |
ggagtagcataagggccccatatatcagcatgtaacaaatcaaaaatgttattagaatgagtaacactattaggataaggaagaactctttgtttggaaa |
11425 |
T |
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| Q |
104 |
aatgacaaacatcacaaggagtatttttattatgattcttgtaagaaataaaaggataagttgaagcaatacatttgtgaatagcgtcagagatatgacc |
203 |
Q |
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| T |
11424 |
aatgacaaacatcacaaggagtatttttattatgattcttgtaagaaataaaaggataagttgaagcaatacatttgtgaatagcgtcagagatatgacc |
11325 |
T |
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| Q |
204 |
taatctacaatgccataatgaggcagaatccatgttattagaaacagaattacaagaaagcatgggagaaagtaaagaaactgaggcatgggcttgtata |
303 |
Q |
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| T |
11324 |
taatctacaatgccataaagaggcagaatccatgttattagaaacagaattacaagaaagcatgggagaaagtaaagaaactgaggcatgggcttgtata |
11225 |
T |
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| Q |
304 |
gcatacaaatctccatgtctctcagctgtaccaatcattttcttggtggaattctgcaaaatcaaacacttattaagttgaaaggtaacatgacaatcca |
403 |
Q |
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| T |
11224 |
gcatacaaatctccatgtctctcagctgtaccaatcattttcttggtggaattctgcaaaatcaaacacttattaagttgaaaggtaacatgacaatcca |
11125 |
T |
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| Q |
404 |
aagaagtaagtaacttagttacagaaattaaattaacattaaaag |
448 |
Q |
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| T |
11124 |
aagaagtaagtaacttagttacagaaattaaattaacattaaaag |
11080 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 22454726 - 22454768
Alignment:
| Q |
167 |
aagcaatacatttgtgaatagcgtcagagatatgacctaatct |
209 |
Q |
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| T |
22454726 |
aagcaatacatttgtgaatagcgtcagagatatgacctaatct |
22454768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 41059929 - 41059995
Alignment:
| Q |
303 |
agcatacaaatctccatgtctctcagctgtaccaatcattttcttggtggaattctgcaaaatcaaa |
369 |
Q |
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| T |
41059929 |
agcatacaaacatccatgtctctcctccgtaccaatcagtttcttggttgaattatgtaaaatcaaa |
41059995 |
T |
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