View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6176_low_1 (Length: 901)

Name: NF6176_low_1
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6176_low_1
NF6176_low_1
[»] chr1 (4 HSPs)
chr1 (21-892)||(52092654-52093525)
chr1 (25-860)||(52082489-52083325)
chr1 (658-766)||(19468488-19468596)
chr1 (281-322)||(19468117-19468158)
[»] chr8 (5 HSPs)
chr8 (671-767)||(27922509-27922605)
chr8 (671-761)||(17636403-17636493)
chr8 (671-761)||(18315275-18315365)
chr8 (671-767)||(32151302-32151398)
chr8 (673-767)||(17628018-17628112)
[»] chr5 (4 HSPs)
chr5 (658-763)||(41889543-41889648)
chr5 (671-767)||(32267476-32267572)
chr5 (676-766)||(41901542-41901632)
chr5 (694-767)||(20478107-20478180)
[»] chr4 (20 HSPs)
chr4 (590-767)||(1548344-1548522)
chr4 (671-767)||(8187093-8187189)
chr4 (690-858)||(1754429-1754589)
chr4 (671-764)||(7307864-7307957)
chr4 (671-767)||(546914-547010)
chr4 (671-767)||(1524488-1524584)
chr4 (658-761)||(532196-532299)
chr4 (581-640)||(1754611-1754670)
chr4 (673-767)||(553480-553574)
chr4 (670-767)||(3438567-3438663)
chr4 (281-322)||(55908337-55908378)
chr4 (692-756)||(640927-640991)
chr4 (671-767)||(1513409-1513505)
chr4 (744-860)||(6006235-6006351)
chr4 (671-767)||(8184032-8184128)
chr4 (590-640)||(1552685-1552735)
chr4 (673-767)||(1552771-1552865)
chr4 (671-737)||(12121459-12121525)
chr4 (698-767)||(558499-558568)
chr4 (658-767)||(55908717-55908826)
[»] chr3 (12 HSPs)
chr3 (585-767)||(51113694-51113879)
chr3 (671-767)||(51120895-51120991)
chr3 (675-822)||(33714861-33715008)
chr3 (684-822)||(33708989-33709127)
chr3 (694-767)||(13470757-13470830)
chr3 (686-753)||(37580837-37580904)
chr3 (448-506)||(27005557-27005615)
chr3 (447-481)||(33396786-33396820)
chr3 (447-481)||(33708804-33708838)
chr3 (447-481)||(37580607-37580641)
chr3 (686-756)||(37587571-37587641)
chr3 (448-481)||(33093715-33093748)
[»] chr6 (16 HSPs)
chr6 (671-767)||(6432162-6432258)
chr6 (670-769)||(6423216-6423315)
chr6 (693-762)||(6585261-6585330)
chr6 (694-769)||(6426510-6426585)
chr6 (675-766)||(14802338-14802429)
chr6 (694-767)||(6394865-6394938)
chr6 (671-764)||(6410010-6410103)
chr6 (281-322)||(8913681-8913722)
chr6 (694-764)||(10579761-10579831)
chr6 (699-767)||(6402861-6402929)
chr6 (683-767)||(6594620-6594704)
chr6 (683-767)||(14820694-14820778)
chr6 (694-761)||(6415973-6416040)
chr6 (694-767)||(6596953-6597026)
chr6 (694-763)||(7119162-7119231)
chr6 (694-763)||(7131640-7131709)
[»] chr2 (6 HSPs)
chr2 (671-753)||(32785774-32785856)
chr2 (703-761)||(44575529-44575587)
chr2 (675-767)||(45245091-45245183)
chr2 (583-649)||(43277371-43277440)
chr2 (281-322)||(1037273-1037314)
chr2 (658-767)||(1037653-1037762)
[»] scaffold0041 (1 HSPs)
scaffold0041 (696-767)||(39185-39256)
[»] chr7 (1 HSPs)
chr7 (694-767)||(15092176-15092249)


Alignment Details
Target: chr1 (Bit Score: 819; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 819; E-Value: 0
Query Start/End: Original strand, 21 - 892
Target Start/End: Complemental strand, 52093525 - 52092654
Alignment:
Q  21 aaggatgtacgttagttcgaagatgattagctctctaaggaatttgaaaggtttgacttgtcttgatttgtcgtctgcgcgtatatcagatcatttgctc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52093525 aaggatgtacgttagttcgaagatgattagctctctaaggaatttgaaaggtttgacttgtcttgatttgtcgtctgcgcgtatatcagatcatttgctc 52093426  T
Q  121 tcatctcttgcagagcaaggtcttcctttgaagagactttcgctaaaaaattctatggattatagttatgctggaatctttttgtttgttatcaaaatgt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  52093425 tcatctcttgcagagcaaggtcttcctttgaagagactttcgctaaaaaattctatggattatagttatgccggaatctttt-gtttgttatcaaaatgt 52093327  T
Q  221 cagtttttacaacatttggatcttcaatattcattctatttgaatgatcaagat--tgttgggttgtctttggttcttggtaatttggtgtctataaacc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  52093326 cagtttttacaacatttggatcttcaatattcattctatttgaatgatcaagatattgttgggttgtctttggttcttggtaatttggtgtctataaacc 52093227  T
Q  319 ttagcccttgtaccaatatcactgaattaaccttggtgtcactagttaggaactgtcctttcctcagcgagatcagaagtggtattggaaagttttgtga 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52093226 ttagcccttgtaccaatatcactgaattaaccttggtgtcactagttaggaactgtcctttcctcagcgagatcagaagtggtattggaaagttttgtga 52093127  T
Q  419 taagaattgtaattgtttgatggactttgttgtataccctcaagtgaagtctctccatttggcaggcaatccacggttgaaaaatgaaagcatcaaaatg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52093126 taagaattgtaattgtttgatggactttgttgtataccctcaagtgaagtctctccatttggcaggcaatccacggttgaaaaatgaaagcatcaaaatg 52093027  T
Q  519 ttgccttctcttttcccaaacctgcaggggcttgacctgagaatgagatattgccattgctattgcatatccgaaggtattgttgaagttttaagatgtt 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52093026 ttgccttctcttttcccaaacctgcaggggcttgacctgagaatgagatattgccattgctattgcatatccgaaggtattgttgaagttttaagatgtt 52092927  T
Q  619 gtaaaattactcatttgaacttgagatcttggtcaacattgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagac 718  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  52092926 gtaaaattactcatttgaacttgagatcttggtcaacattgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttggcaaagac 52092827  T
Q  719 aaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactacatttggacttggaacggtgtgatcatatcacagagaaaggagtg 818  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  52092826 aaaaattgatgatgacacattgtatgtgatctcaaagagtttttgtgggctactacaattggacttggaacggtgtgatcatatcacagagaaaggagtg 52092727  T
Q  819 aggcacgtagtagaaaactgcacacgattgagagagataaatatacgaggttgtcgtgaggtgtgtgatgatgt 892  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52092726 aggcacgtagta-aaaactgcacacgattgagagagataaatatacgaggttgtcgtgaggtgtgtgttgatgt 52092654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 25 - 860
Target Start/End: Complemental strand, 52083325 - 52082489
Alignment:
Q  25 atgtacgttagttcgaagatgattagctctctaaggaatttgaaaggtttgacttgtcttgatttgtcgtctgcgcgtatatcagatcatttgctctcat 124  Q
    ||||||| || ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||  |||||||||||| |||||||||||||    
T  52083325 atgtacgctacttcgaagatgattagctctttaaggaatttgaaaggtctgacctgtcttgatttgtcgtctttgcgtatatcagaccatttgctctcat 52083226  T
Q  125 ctcttgcagagcaaggtcttcctttgaagagactttcgctaaaaaattctatggattatagttatgctggaatctttttgtttgttatcaaaatgtcagt 224  Q
    |||||||| || ||||||| ||||||||||||||||| || ||||||| ||  ||||||||||||||||||||||||| || |||||||||||||||| |    
T  52083225 ctcttgcaaaggaaggtctgcctttgaagagactttcactcaaaaattgtacagattatagttatgctggaatctttt-gtctgttatcaaaatgtcaat 52083127  T
Q  225 ttttacaacatttggatcttcaatattcattctatttgaatgatcaagat--tgttgggttgtctttggttcttggtaatttggtgtctataaaccttag 322  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||  |||||||||||||  ||||||||||| |||| ||||||||||||||||    
T  52083126 ttttacaacatttggatcttcaatattcgttctatttgaatgatcaatatgttgttgggttgtctacggttcttggtagtttgctgtctataaaccttag 52083027  T
Q  323 cccttgtaccaatatcactgaattaaccttggtgtcactagttaggaactgtcctttcctcagcgagatcagaa---------gtggtattggaaagttt 413  Q
    || |||||   |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||         ||| |||||||||||||    
T  52083026 ccattgta---atatcactgaattaaccttgctgtcactagttaggaactgtcctttcctcagcaagatcataatggaatgcagtgatattggaaagttt 52082930  T
Q  414 tgtgataagaattgtaattgtttgatggactttgttgtataccctcaagtgaagtctctccatttggcaggcaatccacggttgaaaaatgaaagcatca 513  Q
    ||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||  |||||| |||||||||||||    
T  52082929 tgtgataagaactctaattctttgctggactttgttgtataccctcaagtgaagtctctccatttggctcgcaatccattgttgaagaatgaaagcatca 52082830  T
Q  514 aaatgttgccttctcttttcccaaacctgcaggggcttgacctgagaatgagatattgccattgctattgcatatccgaaggtattgttgaagttttaag 613  Q
    |||||||| |||||||||| |||||| |||| | |||||||||||||      ||||||||||||||||||||||| || ||||| ||||||||||||||    
T  52082829 aaatgttggcttctctttttccaaacttgcaagtgcttgacctgaga------tattgccattgctattgcatatctgacggtatcgttgaagttttaag 52082736  T
Q  614 atgttgtaaaattactcatttgaacttgagatcttggtcaacattgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtca 713  Q
    || ||||||||||| ||| ||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082735 atattgtaaaattattcacttggacatgagatcttgttcaacactgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtca 52082636  T
Q  714 aagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactacatttggacttggaacggtgtgatcatatcacagagaaag 813  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  52082635 aagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactacaattggacttggaacggtgtgatcatatcacagagaaag 52082536  T
Q  814 gagtgaggcacgtagtagaaaactgcacacgattgagagagataaat 860  Q
    ||||  |||||||||||||||||||||||||| ||||||||||||||    
T  52082535 gagtcgggcacgtagtagaaaactgcacacgactgagagagataaat 52082489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 658 - 766
Target Start/End: Original strand, 19468488 - 19468596
Alignment:
Q  658 tgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagag 757  Q
    |||||||||||  | ||||||||  |||| ||||  ||||||||||||| |||||| | |||||  |||||||||||||| | ||||||||||||||||     
T  19468488 tgaatctacttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaaagaa 19468587  T
Q  758 ttgttgtgg 766  Q
     ||||||||    
T  19468588 ctgttgtgg 19468596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 19468117 - 19468158
Alignment:
Q  281 gttgtctttggttcttggtaatttggtgtctataaaccttag 322  Q
    |||||||||| |||||||| |||| |||||||||||||||||    
T  19468117 gttgtctttgtttcttggtgatttagtgtctataaaccttag 19468158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 671 - 767
Target Start/End: Complemental strand, 27922605 - 27922509
Alignment:
Q  671 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||||| ||||| |||||||||||||||||||||||||| | |||||  ||||||||||| || | ||| |||||||||||||||||||||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtggg 27922509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 671 - 761
Target Start/End: Original strand, 17636403 - 17636493
Alignment:
Q  671 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgt 761  Q
    |||||||||| ||||| |||||||||||||||||||||||||| | |||  | |||| |||||| ||||||||||||||||||||||||||    
T  17636403 aatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgt 17636493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 671 - 761
Target Start/End: Original strand, 18315275 - 18315365
Alignment:
Q  671 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgt 761  Q
    |||||||||| ||||| ||||| |||||||||||||||||||| | |||||| ||||||||||| || | |||||||||||||||||||||    
T  18315275 aatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgt 18315365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 671 - 767
Target Start/End: Complemental strand, 32151398 - 32151302
Alignment:
Q  671 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||||  ||||||||||  |||||||||| |||||||||   ||||   |||||||||||||| | ||||||||||||||||||||| |||||    
T  32151398 aatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtagtggg 32151302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 673 - 767
Target Start/End: Original strand, 17628018 - 17628112
Alignment:
Q  673 tgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||| || |||| |||||||||||||||||||||||| | || | | |||||||| || || |   |||||||||||||| ||||| ||||    
T  17628018 tgaactttaaactttctaaattggaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaagaattgttttggg 17628112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 658 - 763
Target Start/End: Original strand, 41889543 - 41889648
Alignment:
Q  658 tgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagag 757  Q
    |||| ||||||  |||||||||| ||||| |||||||||||||||||||||| ||| | |||||| |||||||||||||| | |||  ||||||||||||    
T  41889543 tgaagctacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagag 41889642  T
Q  758 ttgttg 763  Q
    ||||||    
T  41889643 ttgttg 41889648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 671 - 767
Target Start/End: Complemental strand, 32267572 - 32267476
Alignment:
Q  671 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||||| ||||| ||||||||||||| |||||||||||| | |||| | ||||||||||| || | ||| |||||||||||||||||||||||    
T  32267572 aatgaactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtggg 32267476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 676 - 766
Target Start/End: Original strand, 41901542 - 41901632
Alignment:
Q  676 actttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgg 766  Q
    ||||| ||||| ||||| |||||||||||||||||||| | |||||| ||||||||||| || | ||| ||||||||||||||||||||||    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtgg 41901632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 694 - 767
Target Start/End: Original strand, 20478107 - 20478180
Alignment:
Q  694 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||||||||||||||| | |||||  ||||||| |||||||| | ||||||||||| || ||||||||||    
T  20478107 tggaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtggg 20478180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 590 - 767
Target Start/End: Original strand, 1548344 - 1548522
Alignment:
Q  590 cgaaggtattgttgaagttttaagatgttgtaaaattactcatttgaacttgagatcttggtc-aacattgaatctactttcaa-tgaactttcaagttt 687  Q
    ||||||||||  ||||||||||||||||||||| ||||  || |||||||| || || | ||  || | |||| |||||||  | |||||||| || ||     
T  1548344 cgaaggtatttgtgaagttttaagatgttgtaagattagacagttgaactt-agctcgtagtttaaaagtgaagctactttggactgaactttgaaattc 1548442  T
Q  688 ccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    ||||| |||||||||||||||||||| | ||||  ||||||||||||||| |  ||||||||||||||||||||||||||    
T  1548443 ccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtggg 1548522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 671 - 767
Target Start/End: Original strand, 8187093 - 8187189
Alignment:
Q  671 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||||| || |||||||| |||||||||||||||||||| | |||| | |||||||| ||||| | ||||  || ||||||||||||||||||    
T  8187093 aatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtggg 8187189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 690 - 858
Target Start/End: Complemental strand, 1754589 - 1754429
Alignment:
Q  690 aaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactacatttggacttggaac 789  Q
    ||||||||||||||||||||||| |||||||||||| | ||||        ||  |||||||||||||||| | |||  |||| || ||||| || |||     
T  1754589 aaattggaggtgttgaacttgtcgaagacaaaaattaaggatg--------tacatgatctcaaagagttgctctggactactgcaattggatttagaaa 1754498  T
Q  790 ggtgtgatcatatcacagagaaaggagtgaggcacgtagtagaaaactgcacacgattgagagagataa 858  Q
      ||| || ||||||||||||||||||||| ||| ||||||||||| ||||||||  ||| ||||||||    
T  1754497 aatgttataatatcacagagaaaggagtgaagcaagtagtagaaaaatgcacacgcctgaaagagataa 1754429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 671 - 764
Target Start/End: Complemental strand, 7307957 - 7307864
Alignment:
Q  671 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgt 764  Q
    |||||||||| ||||| ||||||||||||| |||||||||||| | ||| || ||||||||||| || |   | ||||||||||||||||||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgt 7307864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 671 - 767
Target Start/End: Complemental strand, 547010 - 546914
Alignment:
Q  671 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||||| ||||| | |||||||||||| |||||||||||   ||||   |  ||||||||||| | |||||||||||||||||||||||||||    
T  547010 aatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 671 - 767
Target Start/End: Original strand, 1524488 - 1524584
Alignment:
Q  671 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||||| ||||| |||| |||||||||||||| ||||||   ||||   |||||||||||||| | ||| |||||||| |||||||| |||||    
T  1524488 aatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtggg 1524584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 658 - 761
Target Start/End: Complemental strand, 532299 - 532196
Alignment:
Q  658 tgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagag 757  Q
    |||||||||||  |||||||||| ||||  ||||  | |||||||||||||||||| | ||||| |||||||||||||   | ||||||| ||||||||     
T  532299 tgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaaagctttatgtgacctcaaagaa 532200  T
Q  758 ttgt 761  Q
    ||||    
T  532199 ttgt 532196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 581 - 640
Target Start/End: Complemental strand, 1754670 - 1754611
Alignment:
Q  581 ttgcatatccgaaggtattgttgaagttttaagatgttgtaaaattactcatttgaactt 640  Q
    |||||||||  ||||||| ||||||||||||||||||| ||||||||| || ||||||||    
T  1754670 ttgcatatctaaaggtatcgttgaagttttaagatgttctaaaattacacaattgaactt 1754611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 673 - 767
Target Start/End: Complemental strand, 553574 - 553480
Alignment:
Q  673 tgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||| |||||  |||| ||||||||||||||||||||   |||| | ||||||||||| || |  ||||||| ||||||||||||| ||||    
T  553574 tgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctggg 553480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 767
Target Start/End: Original strand, 3438567 - 3438663
Alignment:
Q  670 caatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    ||||||||||| | ||||| ||||||||||| |||| ||||||| | |||| | |||||||| ||| | |  |||| |||||||||||||||||||||    
T  3438567 caatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgat-aaatactccatgtaatctcaaagagttgttgtggg 3438663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 55908337 - 55908378
Alignment:
Q  281 gttgtctttggttcttggtaatttggtgtctataaaccttag 322  Q
    |||||||||| |||||||| ||||||||||||||||||||||    
T  55908337 gttgtctttgtttcttggtgatttggtgtctataaaccttag 55908378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 692 - 756
Target Start/End: Complemental strand, 640991 - 640927
Alignment:
Q  692 attggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaaga 756  Q
    |||||||||||||||||||||| | |||||  |||||||||||||| | || |||| ||||||||    
T  640991 attggaggtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaaga 640927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 671 - 767
Target Start/End: Original strand, 1513409 - 1513505
Alignment:
Q  671 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||||| ||||| ||||| | || |||||||||||||||   |||||  |||||||||||||| | || || ||||||||| ||||| |||||    
T  1513409 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtggg 1513505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 744 - 860
Target Start/End: Complemental strand, 6006351 - 6006235
Alignment:
Q  744 gtgatctcaaagagttgttgtgggatactacatttggacttggaacggtgtgatcatatcacagagaaaggagtgaggcacgtagtagaaaactgcacac 843  Q
    |||||||||| |||||| | |||| |||| ||  | || |||| ||| ||| || || ||||| |||| ||||||| ||| || ||||||||||||| ||    
T  6006351 gtgatctcaatgagttgctttgggctactgcaacttgatttgggacgttgttatgatgtcacaaagaagggagtgatgcaagtcgtagaaaactgcaaac 6006252  T
Q  844 gattgagagagataaat 860  Q
     ||||||||||||||||    
T  6006251 aattgagagagataaat 6006235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 671 - 767
Target Start/End: Original strand, 8184032 - 8184128
Alignment:
Q  671 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||||| ||||| | ||| | |||||||||||||||||| | |||| | ||||||||  | || | ||||  |||||||||||||||||||||    
T  8184032 aatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtggg 8184128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 590 - 640
Target Start/End: Original strand, 1552685 - 1552735
Alignment:
Q  590 cgaaggtattgttgaagttttaagatgttgtaaaattactcatttgaactt 640  Q
    ||||||||||  ||||||||||||||||||||| ||||  |||||||||||    
T  1552685 cgaaggtatttgtgaagttttaagatgttgtaagattagacatttgaactt 1552735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 673 - 767
Target Start/End: Original strand, 1552771 - 1552865
Alignment:
Q  673 tgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||| || || ||||| |||| |||||||| |||||| | ||||| ||| ||||||||||| |  ||||||| ||||||| |||| |||||    
T  1552771 tgaactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtggg 1552865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 671 - 737
Target Start/End: Original strand, 12121459 - 12121525
Alignment:
Q  671 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaaca 737  Q
    |||||||||| ||||| ||||| | || ||||||||||||||| | |||||  ||||||||||||||    
T  12121459 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaaca 12121525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 698 - 767
Target Start/End: Complemental strand, 558568 - 558499
Alignment:
Q  698 ggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    ||||||||||||||||   ||| | |||||||||||| || |  |||||||||||||||||||| |||||    
T  558568 ggtgttgaacttgtcattaacatatattgatgatgaagcactccatgtgatctcaaagagttgtcgtggg 558499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 767
Target Start/End: Original strand, 55908717 - 55908826
Alignment:
Q  658 tgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagag 757  Q
    |||| ||||||  ||| |||||| ||||| |  |||| |||||||| ||||||||| | |||    |||||||||||||| | ||| ||||||||||||     
T  55908717 tgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaa 55908816  T
Q  758 ttgttgtggg 767  Q
    ||||||||||    
T  55908817 ttgttgtggg 55908826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 6e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 585 - 767
Target Start/End: Original strand, 51113694 - 51113879
Alignment:
Q  585 atatccgaaggtattgttgaagttttaa---gatgttgtaaaattactcatttgaacttgagatcttggtcaacattgaatctactttcaatgaactttc 681  Q
    |||||||||||||||  | |||||||||   |||||||||||||||  |||||||| ||    |  || |||| | |||| ||||||  ||||||||||     
T  51113694 atatccgaaggtatttgtcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttg 51113793  T
Q  682 aagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    ||| | ||||| ||||||||||  |||||||||| ||||   |||||||||||||| | ||||||||||| |||||||||||||||    
T  51113794 aagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtggg 51113879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 671 - 767
Target Start/End: Original strand, 51120895 - 51120991
Alignment:
Q  671 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||||| |||||  ||||||||||||||||||||||||  | |||| | |||||||||||| | | ||||| ||||||||||||||| |||||    
T  51120895 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 51120991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 675 - 822
Target Start/End: Original strand, 33714861 - 33715008
Alignment:
Q  675 aactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactac 774  Q
    |||||| ||||||||||| |||||||| |||||||||||||  ||| |||||||||||   ||||||||| ||| |||||||||||   | || | ||||    
T  33714861 aactttgaagtttccaaactggaggtgctgaacttgtcaaactcaagaattgatgatggcgcattgtatgcgatttcaaagagttgccctcggcttctac 33714960  T
Q  775 atttggacttggaacggtgtgatcatatcacagagaaaggagtgaggc 822  Q
    || ||||| |||||   ||| ||||| |||| ||||| ||||||||||    
T  33714961 atctggacctggaagattgtcatcatgtcacggagaagggagtgaggc 33715008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 684 - 822
Target Start/End: Original strand, 33708989 - 33709127
Alignment:
Q  684 gtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactacatttggact 783  Q
    ||||||||| |||||||| ||||||||||| |  ||| |||||||||||   |||||||||  ||||||||||||||   | || | |||||| |||||     
T  33708989 gtttccaaactggaggtgctgaacttgtcagactcaagaattgatgatggtgcattgtatgcaatctcaaagagttgccctcggcttctacatctggacc 33709088  T
Q  784 tggaacggtgtgatcatatcacagagaaaggagtgaggc 822  Q
    ||||| | ||| ||||| |||| ||||| ||||||||||    
T  33709089 tggaaggatgtcatcatgtcacggagaagggagtgaggc 33709127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 694 - 767
Target Start/End: Original strand, 13470757 - 13470830
Alignment:
Q  694 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||||||||||||||||| |||||  || ||||| ||||| | ||| |||||||||||| ||||||||||    
T  13470757 tggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtggg 13470830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 686 - 753
Target Start/End: Original strand, 37580837 - 37580904
Alignment:
Q  686 ttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaa 753  Q
    ||||||| | ||||| ||||||||||||||  ||| |||||||||| ||  |||||||||||||||||    
T  37580837 ttccaaactcgaggtattgaacttgtcaaactcaagaattgatgataaagtattgtatgtgatctcaa 37580904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 448 - 506
Target Start/End: Original strand, 27005557 - 27005615
Alignment:
Q  448 ttgtataccctcaagtgaagtctctccatttggcaggcaatccacggttgaaaaatgaa 506  Q
    ||||||||  |||||||||||||||| ||||||| | ||||||||| |||||| |||||    
T  27005557 ttgtatacaatcaagtgaagtctctctatttggctgacaatccacgtttgaaagatgaa 27005615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 447 - 481
Target Start/End: Complemental strand, 33396820 - 33396786
Alignment:
Q  447 gttgtataccctcaagtgaagtctctccatttggc 481  Q
    |||||||||| ||||||||||||||||||||||||    
T  33396820 gttgtataccatcaagtgaagtctctccatttggc 33396786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 447 - 481
Target Start/End: Original strand, 33708804 - 33708838
Alignment:
Q  447 gttgtataccctcaagtgaagtctctccatttggc 481  Q
    |||||||||| ||||||||||||||||||||||||    
T  33708804 gttgtataccatcaagtgaagtctctccatttggc 33708838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 447 - 481
Target Start/End: Original strand, 37580607 - 37580641
Alignment:
Q  447 gttgtataccctcaagtgaagtctctccatttggc 481  Q
    |||||||||| ||||||||||||||||||||||||    
T  37580607 gttgtataccatcaagtgaagtctctccatttggc 37580641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 686 - 756
Target Start/End: Original strand, 37587571 - 37587641
Alignment:
Q  686 ttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaaga 756  Q
    ||||||| ||||||| |||||||||||| |  ||| |||||||||| ||  |||||||| |||||||||||    
T  37587571 ttccaaactggaggtattgaacttgtcacactcaagaattgatgataaagtattgtatgcgatctcaaaga 37587641  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 481
Target Start/End: Original strand, 33093715 - 33093748
Alignment:
Q  448 ttgtataccctcaagtgaagtctctccatttggc 481  Q
    ||||||||| ||||||||||||||||||||||||    
T  33093715 ttgtataccgtcaagtgaagtctctccatttggc 33093748  T

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Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 671 - 767
Target Start/End: Complemental strand, 6432258 - 6432162
Alignment:
Q  671 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||||| ||||| ||||  || ||||||||||||||||||| ||||   |||||||||||||| | |||||||||| ||||| ||||||||||    
T  6432258 aatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtggg 6432162  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 670 - 769
Target Start/End: Complemental strand, 6423315 - 6423216
Alignment:
Q  670 caatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggat 769  Q
    ||||||||||| ||||| ||||  |||||||||||||||||||||| |||| | ||   ||| ||||| | |||| ||||||||||||||||||||||||    
T  6423315 caatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggat 6423216  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 693 - 762
Target Start/End: Original strand, 6585261 - 6585330
Alignment:
Q  693 ttggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgtt 762  Q
    |||||||| |||||||||||| | |||||  |||||||||||||| | ||||||||||||||||||||||    
T  6585261 ttggaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgtt 6585330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 694 - 769
Target Start/End: Complemental strand, 6426585 - 6426510
Alignment:
Q  694 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggat 769  Q
    ||||||||||||| |||||||| ||||  |||||||||||||| || |||| ||||||||||| ||||||| ||||    
T  6426585 tggaggtgttgaatttgtcaaacacaagcattgatgatgaaactttttatgcgatctcaaagaattgttgtcggat 6426510  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 675 - 766
Target Start/End: Complemental strand, 14802429 - 14802338
Alignment:
Q  675 aactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgg 766  Q
    |||||| ||||| ||||  |||| |||||||| |||||||| |||||  |||||||||||||| | |||||||| ||||||| |||||||||    
T  14802429 aactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgtgg 14802338  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 694 - 767
Target Start/End: Complemental strand, 6394938 - 6394865
Alignment:
Q  694 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||||||||||||||||| ||||   |||||||||||||  | | |||||||||||||| ||||||||||    
T  6394938 tggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtggg 6394865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 671 - 764
Target Start/End: Complemental strand, 6410103 - 6410010
Alignment:
Q  671 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgt 764  Q
    |||||||||| ||||| ||||  || |||||||||||| |||||| ||||   |||||||||||||  | |||||||||||||||| |||||||    
T  6410103 aatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgt 6410010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 8913681 - 8913722
Alignment:
Q  281 gttgtctttggttcttggtaatttggtgtctataaaccttag 322  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  8913681 gttgtctttgtttcttggtaatttggtgtctataaaccttag 8913722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 694 - 764
Target Start/End: Original strand, 10579761 - 10579831
Alignment:
Q  694 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgt 764  Q
    |||||||||||||||||||| | |||||| |||||||| ||||| | |||  ||||||||||| |||||||    
T  10579761 tggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgt 10579831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 699 - 767
Target Start/End: Complemental strand, 6402929 - 6402861
Alignment:
Q  699 gtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    ||||||||||||||| | || ||  |||||||||||||| | |||||||||||||||| |||| |||||    
T  6402929 gtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtggg 6402861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 683 - 767
Target Start/End: Original strand, 6594620 - 6594704
Alignment:
Q  683 agtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||| ||||| ||||||||||| |||||||||| ||| |  |||||||||| ||| |   |||||||||||||| ||||||||||    
T  6594620 agttcccaaactggaggtgttgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaagaattgttgtggg 6594704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 683 - 767
Target Start/End: Complemental strand, 14820778 - 14820694
Alignment:
Q  683 agtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||| |||| || |||||||||||||| ||||| |||||  ||||| |||||||| | ||| ||||||| |||| ||||||||||    
T  14820778 agttcccaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtggg 14820694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 761
Target Start/End: Complemental strand, 6416040 - 6415973
Alignment:
Q  694 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgt 761  Q
    |||||||||||||||||||||| |||||  || ||||| ||||  | |||||||||||||||| ||||    
T  6416040 tggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgt 6415973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 767
Target Start/End: Original strand, 6596953 - 6597026
Alignment:
Q  694 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||||||||||||||||||  |||||  |||||||||||||| | || |  |||||||||| ||||| ||||    
T  6596953 tggaggtgttgaacttgtcaagtacaaatgttgatgatgaaacactctacgctatctcaaagaattgttctggg 6597026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 763
Target Start/End: Complemental strand, 7119231 - 7119162
Alignment:
Q  694 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttg 763  Q
    |||||||||||||||||||| | || ||  |||||||||||||| |  |||||||||| |||| ||||||    
T  7119231 tggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttg 7119162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 763
Target Start/End: Complemental strand, 7131709 - 7131640
Alignment:
Q  694 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttg 763  Q
    |||||||||||||||||||| | || ||  |||||||||||||| |  |||||||||| |||| ||||||    
T  7131709 tggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttg 7131640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 671 - 753
Target Start/End: Original strand, 32785774 - 32785856
Alignment:
Q  671 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaa 753  Q
    |||||||||| ||| | ||||| | |||||||||||||||||| | |||| ||||||||||||| || | |||||||||||||    
T  32785774 aatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 32785856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 703 - 761
Target Start/End: Original strand, 44575529 - 44575587
Alignment:
Q  703 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgt 761  Q
    |||| |||||||| |||| | |||||||||| |||||||||||||||||||||||||||    
T  44575529 tgaatttgtcaaaaacaagagttgatgatgacacattgtatgtgatctcaaagagttgt 44575587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 675 - 767
Target Start/End: Original strand, 45245091 - 45245183
Alignment:
Q  675 aactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    |||||| ||||| | ||| | ||||||||||| |||||| ||||||   |||||||||||||| |  |||||||||||||||||||| |||||    
T  45245091 aactttgaagttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtggg 45245183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 583 - 649
Target Start/End: Original strand, 43277371 - 43277440
Alignment:
Q  583 gcatatccgaaggtattgttgaagttttaag---atgttgtaaaattactcatttgaacttgagatcttg 649  Q
    ||||||| ||| ||||||| |||||||||||   ||||||||||||||| ||||||||||||| ||||||    
T  43277371 gcatatctgaatgtattgtcgaagttttaaggagatgttgtaaaattacgcatttgaacttgacatcttg 43277440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 1037273 - 1037314
Alignment:
Q  281 gttgtctttggttcttggtaatttggtgtctataaaccttag 322  Q
    |||||||||| |||||||| ||||||||||||||||||||||    
T  1037273 gttgtctttgtttcttggtgatttggtgtctataaaccttag 1037314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 767
Target Start/End: Original strand, 1037653 - 1037762
Alignment:
Q  658 tgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagag 757  Q
    |||| ||||||  ||| |||||| ||||| |  |||| |||||||| ||||||||| | |||    |||||||||||||| | ||| ||||||||||||     
T  1037653 tgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaa 1037752  T
Q  758 ttgttgtggg 767  Q
    ||||||||||    
T  1037753 ttgttgtggg 1037762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 696 - 767
Target Start/End: Complemental strand, 39256 - 39185
Alignment:
Q  696 gaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    ||||||||||||||| ||   |||||  || ||||||||||| | ||||||||||||||||||||| |||||    
T  39256 gaggtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtggg 39185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 767
Target Start/End: Original strand, 15092176 - 15092249
Alignment:
Q  694 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 767  Q
    ||||||||||||| |||||| | |||||  || ||||| ||||| | |||| ||||||||||| ||||||||||    
T  15092176 tggaggtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtggg 15092249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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