View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6176_low_10 (Length: 453)

Name: NF6176_low_10
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6176_low_10
NF6176_low_10
[»] chr5 (5 HSPs)
chr5 (23-134)||(8466632-8466743)
chr5 (259-338)||(8467320-8467399)
chr5 (368-444)||(8467399-8467475)
chr5 (165-243)||(8467198-8467276)
chr5 (130-168)||(8467152-8467190)


Alignment Details
Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 8466632 - 8466743
Alignment:
Q  23 atgtttaataaacattgcctacgtagaaaacttaaaagttgctgagtattgaaatgtcaccgttcatctcaaagaatgaactttccctgagttaagatgc 122  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  8466632 atgtttaataaacattacctacgtagaaaacttaaaagttgttgagtattgaaatgtcaccggtcatctcaaagaatgaacttttcctgagttaagatgc 8466731  T
Q  123 tcagataaatta 134  Q
    ||||||||||||    
T  8466732 tcagataaatta 8466743  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 8467320 - 8467399
Alignment:
Q  259 tagctgcgagtactacaaagagacttcaggccaaaaaacagttatcatattcacacatactatattacatagtttcagtt 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8467320 tagctgcgagtactacaaagagacttcaggccaaaaaacagttatcatattcacacatactatattacatagtttcagtt 8467399  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 8467399 - 8467475
Alignment:
Q  368 tgcagcattagcttttctacccctcttattagtagtagacttaatggacttgctcttcttattcacaaccttcttct 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8467399 tgcagcattagcttttctacccctcttattagtagtagacttaatggacttgctcttcttattcacaaccttcttct 8467475  T

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Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 8467198 - 8467276
Alignment:
Q  165 attagtccgcacattctcaatgatacaggaaattcatcccacaatttaaatcagaacaaaaatagcaaaaggatgtctc 243  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8467198 attagtccgcacattctcaatgatacagaaaattcatcccacaatttaaatcagaacaaaaatagcaaaaggatgtctc 8467276  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 8467152 - 8467190
Alignment:
Q  130 aattattaatacatgcactttgattgtcacagtgaatta 168  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  8467152 aattattaatacttgcactttgattgtcatagtgaatta 8467190  T

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