View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_low_11 (Length: 446)
Name: NF6176_low_11
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 60 - 393
Target Start/End: Original strand, 44623641 - 44623974
Alignment:
| Q |
60 |
atgaagacaatttaagtttgttacaaaaacagcttataaataagcacttatgcgataaagaattacatgagagtattattgtaaatggaagacttacgga |
159 |
Q |
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| T |
44623641 |
atgaagacaatttaagtttgttacaaaaacagcttatacataagcacttatgcgataaagaattacatgagagtattattgtaaatggaagacttacgga |
44623740 |
T |
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| Q |
160 |
ggacggttgaaattaggagaagcgtggttgagtgtataggaggaggaagaagtagaaggcgatgacgtggcatgagttggagttggaaagttcatagctg |
259 |
Q |
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| T |
44623741 |
ggacggttgaaattaggagaagcgtggttgagtgtataggaggaagaagaagtagaaggcgatgacgtggcatgagttggagttggaaagttcatagctg |
44623840 |
T |
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| Q |
260 |
gaagaattcttgtttgagtgctttaacaagaagaagtatcgaacccagaagtgaatttgaaggtgataatgataagtttaacc-aactacaattagtatg |
358 |
Q |
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| T |
44623841 |
gaaaaattcttgtttgagtgctttaacaagaagaagtatcgaacccagaagtgaatttgaaggtgataatgataagtttaaccaaactacaattagtatg |
44623940 |
T |
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| Q |
359 |
gaggagaatgagttataaacttagcacgtgttgtg |
393 |
Q |
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| T |
44623941 |
gaggagaatgagttat-aacttagcacgtgttgtg |
44623974 |
T |
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