View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_low_13 (Length: 382)
Name: NF6176_low_13
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 38124832 - 38124470
Alignment:
| Q |
1 |
cacagacaagcacacacaaaaacaaattcagctgtgtaagtagaaaaaagtgttttcaactgtagatcgtggaatatagcagtttgttcaaactctatta |
100 |
Q |
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| T |
38124832 |
cacagacaagcacaca--aaaacaaattcagctgtgtaagtagaaaaaagtgttttcaagtgtagatcgtggaatatagcagtttgttcaaactctatta |
38124735 |
T |
|
| Q |
101 |
agctacagagtttcatagctactatttgacatcactttgttctaaacagcgtatcacgaaccaatagcaatttatttaaattccatagcactgtagctac |
200 |
Q |
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| T |
38124734 |
agttacagagtttcatagctactatttgacatcactttgttctaaacagcgtatcacgaaccaatagcaatttatttaaattccatagcactgtagctac |
38124635 |
T |
|
| Q |
201 |
nnnnnnnacagtggtagaaaatataccggggcacatacgcgcaatgcatatgaccaaatacacaattaatgattcatttcttcatccacgtgtctactag |
300 |
Q |
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| T |
38124634 |
tttttttacagtggtagaaaatataccggggcacatacgcgcaatgcatatgaccaaatacacaattaatgattcatttcttcatccacgtgtctactag |
38124535 |
T |
|
| Q |
301 |
atttttgagtttcaggtttgattaaagtagttatccatgtttagcagcaaattacataataacac |
365 |
Q |
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| T |
38124534 |
atttttgagtttcaggtttgattaaagtagttatccatgtttagtagcaaattacataataacac |
38124470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 13510301 - 13510345
Alignment:
| Q |
123 |
tatttgacatcactttgttctaaacagcgtatcacgaaccaatag |
167 |
Q |
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| T |
13510301 |
tatttgacatcactttgtactaaatagcgtttcacgaaacaatag |
13510345 |
T |
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