View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_low_15 (Length: 344)
Name: NF6176_low_15
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 50472444 - 50472130
Alignment:
| Q |
16 |
aaattcacacttggacgattacttctattttctcatagattaatcagaccatgaaaaccaataaaaattcactctctagcatatacgtccttccacttac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50472444 |
aaattcacacttggacgattacttctattttctcatagattaatcagaccatgaaaaccaataaaaattcactctctagcatatac---cttccacttac |
50472348 |
T |
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| Q |
116 |
cttagcaacacttatttgttttaggcacgttttgtcaagttacttgtgaataattaaatccagcaaagtttgtatctacatgatccagagttctaaaaag |
215 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50472347 |
cttagcaacacttaattgttttaggcacgttttgtcaagttacttgtgaataattaa-tccagcaaagtttgtatctacatgatccagagttctaaaaag |
50472249 |
T |
|
| Q |
216 |
gaacggtgtagtgccatttttcacattttaaaacatgtactatgggaaaaatctttgaactatttcttctatttagaaactacactagtcttcttttggc |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50472248 |
gaacagtgtagtgccatttttcacattttaaaacatgtactatgggaaaaatctttgaactatttcttctatttagaaactacactagtcttcttttggc |
50472149 |
T |
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| Q |
316 |
ctttaattgactccctttg |
334 |
Q |
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||||||||||||||||||| |
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| T |
50472148 |
ctttaattgactccctttg |
50472130 |
T |
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