View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_low_16 (Length: 328)
Name: NF6176_low_16
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 22 - 312
Target Start/End: Original strand, 37216907 - 37217197
Alignment:
| Q |
22 |
atgccttaaattgaactaagataagatagttcgaagatactttgatactgtgactgatcatttgatgtggatatgtagttggcagctgttgcagcactgt |
121 |
Q |
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| T |
37216907 |
atgccttaaattgaactaagataagatagttccaagatactttgatactgtgactgatcatttgatgtggatatgtagttggcagctgttgcagcactgt |
37217006 |
T |
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| Q |
122 |
gtgtgcaatatgaagctgatttccggccaaacatgacaattgttgtcaaagctctccagccacttctcaatgcaaaaccggctggtcctgaccctaatgc |
221 |
Q |
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| T |
37217007 |
gtgtgcaatatgaagctgatttccggccaaacatgacaattgttgtcaaagctctccagccacttctcaatgcaaaaccggctggtcctgaccctaatgc |
37217106 |
T |
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| Q |
222 |
ttgacatgtcattgaattatcaagagtcataacaaaatttgtgcataaagttgaacttagattgcttggttacctactcaataggaaatat |
312 |
Q |
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| T |
37217107 |
ttgacatgtcattaaattatcaagagtcataacaaaatttgtgcataaagttgaacttagattgcttggtcacctactcaataggaaatat |
37217197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 85 - 228
Target Start/End: Original strand, 23410061 - 23410204
Alignment:
| Q |
85 |
gatgtggatatgtagttggcagctgttgcagcactgtgtgtgcaatatgaagctgatttccggccaaacatgacaattgttgtcaaagctctccagccac |
184 |
Q |
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| T |
23410061 |
gatgtggatatgcagttggcagcagttgcagcactttgtgttcagtatgaagctgattttaggccaaacatgacaattgttgtcaaagctctccagccac |
23410160 |
T |
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| Q |
185 |
ttctcaatgcaaaaccggctggtcctgaccctaatgcttgacat |
228 |
Q |
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| T |
23410161 |
ttctcaattcgaaaccggctggacctgactctcgtgcttgacat |
23410204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 38591582 - 38591507
Alignment:
| Q |
101 |
tggcagctgttgcagcactgtgtgtgcaatatgaagctgatttccggccaaacatgacaattgttgtcaaagctct |
176 |
Q |
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| T |
38591582 |
tggctgctgttgctgcattgtgtgtgcaatatgaagctgatttcagacctaacatgagcattgtagtcaaagctct |
38591507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 188
Target Start/End: Original strand, 52719165 - 52719250
Alignment:
| Q |
103 |
gcagctgttgcagcactgtgtgtgcaatatgaagctgatttccggccaaacatgacaattgttgtcaaagctctccagccacttct |
188 |
Q |
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| T |
52719165 |
gcagctgtagcagcactttgtgtgcagtatgaagctgagtttaggcccaatatgagcattgttgttaaagcactccagccacttct |
52719250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 5336584 - 5336499
Alignment:
| Q |
103 |
gcagctgttgcagcactgtgtgtgcaatatgaagctgatttccggccaaacatgacaattgttgtcaaagctctccagccacttct |
188 |
Q |
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| T |
5336584 |
gcagctatagcagcactgtgtttgcaagatgaagctgattttaggcccaatatgagcattgttgttaaagcactccaaccacttct |
5336499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 51060619 - 51060695
Alignment:
| Q |
98 |
agttggcagctgttgcagcactgtgtgtgcaatatgaagctgatttccggccaaacatgacaattgttgtcaaagct |
174 |
Q |
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| T |
51060619 |
agttggctgctgttgctgcactgtgtgttcaatatgaagctgagtttcgaccaaatatgagcatcattgtcaaagct |
51060695 |
T |
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