View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_low_22 (Length: 282)
Name: NF6176_low_22
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 265
Target Start/End: Complemental strand, 12338872 - 12338623
Alignment:
| Q |
15 |
aagtcacatattttgccctcagtttttcatgtatttggctcccaaggaggcgatgtcaaaagtggaaccttccagatttcctactctgattgctgttgct |
114 |
Q |
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| T |
12338872 |
aagtcacatattt-gccctcagtttttcatgtatttggctccgaaggaggcaatgtcaaaggtggaaccttccagattccctaccctgattgctgttgct |
12338774 |
T |
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| Q |
115 |
caagagctgctgagaaaagacaacaattgttcaactgttgctgaacttgagttaacttcaatggtaggagaagagctagaaactgtaaaagatttggtga |
214 |
Q |
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| T |
12338773 |
caagagctgcagagaaaagacaacaattgttcaactgttgcggaacttgagttaacttcaatggtaggagaagacctagaaactgtaaaagatttggtga |
12338674 |
T |
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| Q |
215 |
aaattcatcgccaatttatgccacataatcgatgtccagtgtgagaacagt |
265 |
Q |
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| T |
12338673 |
aaattcatcgccaatttatgccacataatcgatgtccagtgtgagaacagt |
12338623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 26 - 259
Target Start/End: Complemental strand, 12347369 - 12347136
Alignment:
| Q |
26 |
tttgccctcagtttttcatgtatttggctcccaaggaggcgatgtcaaaagtggaaccttccagatttcctactctgattgctgttgctcaagagctgct |
125 |
Q |
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| T |
12347369 |
tttgccctcgttttttcatgtatttggctcccaaggaggcgatgtcgaaagtggaaccttccagatttcctacgctgattgctgttgctcaagagctgca |
12347270 |
T |
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| Q |
126 |
gagaaaagacaacaattgttcaactgttgctgaacttgagttaacttcaatggtaggagaagagctagaaactgtaaaagatttggtgaaaattcatcgc |
225 |
Q |
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| T |
12347269 |
gagaaaagacaacaattgttcaactgttgctgatcatgagttaacttcaatggtaggggaagacctggaaactgtacaagatttggtgaaaattcatcgc |
12347170 |
T |
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| Q |
226 |
caatttatgccacataatcgatgtccagtgtgag |
259 |
Q |
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| T |
12347169 |
caatttatgccacataatcgatgtccagcgtgag |
12347136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 12392731 - 12392637
Alignment:
| Q |
26 |
tttgccctcagtttttcatgtatttggctcccaaggaggcgatgtcaaaagtggaaccttccagatttcctactctgattgctgttgctcaagag |
120 |
Q |
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| T |
12392731 |
tttgccctcagtttttcatgtgtgtggcttctaaggtggcattgtcaaaggtggaaccttcccaatttcctactctcattgctgttgctcaagag |
12392637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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