View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_low_23 (Length: 270)
Name: NF6176_low_23
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 48064031 - 48063800
Alignment:
| Q |
15 |
atcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcacagaaggtccaactgaagaaaggaatgatatacatg |
114 |
Q |
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| T |
48064031 |
atcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcacagaaggtccaactgaagaaaggaatgatatacatg |
48063932 |
T |
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| Q |
115 |
ttttctggtaacttctannnnnnngtccttaatgattatttgatgaatgttgccatgtttgtgattcattaattcattaatttagctttcttaagcattc |
214 |
Q |
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| T |
48063931 |
ttttctggtaacttctatttttttgtccttaatgattatttgatgaatgttgccatgtttgtg--------attcattaatttagctttcttaagcattc |
48063840 |
T |
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| Q |
215 |
tttatattcagcttggtttcagctcagtgaaggaagtgac |
254 |
Q |
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| T |
48063839 |
tttatattcagcttggtttcagctcagtgaaggaagtgac |
48063800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 48101272 - 48101173
Alignment:
| Q |
27 |
aaatagattcattgttgctagcaacagaagacaaacattggatggtttctcacagaaggtccaactgaagaaaggaatgatatacatgttttctggtaac |
126 |
Q |
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|||||||||||||||||| |||||||||| |||| |||||||| |||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
48101272 |
aaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaagaaaggaatgatatatactttttctggtaac |
48101173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 48068688 - 48068576
Alignment:
| Q |
14 |
catcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcacagaaggtccaactgaagaaaggaatgatatacat |
113 |
Q |
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| T |
48068688 |
catcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaatgatatatat |
48068589 |
T |
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| Q |
114 |
gttttctggtaac |
126 |
Q |
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|||||||||||| |
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| T |
48068588 |
tttttctggtaac |
48068576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 48107700 - 48107588
Alignment:
| Q |
15 |
atcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcacagaaggtccaactgaagaaaggaatgatatacatg |
114 |
Q |
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||||||||||| |||||||||||||||||| ||||| |||| |||| |||| ||| |||| ||||| | ||| || || |||||||| ||||||| | |
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| T |
48107700 |
atcaaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagatagtttttcacaaacggttcagctagagaaaggattgatatatact |
48107601 |
T |
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| Q |
115 |
ttttctggtaact |
127 |
Q |
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||||| ||||||| |
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| T |
48107600 |
ttttcaggtaact |
48107588 |
T |
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