View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_low_27 (Length: 248)
Name: NF6176_low_27
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 50471703 - 50471839
Alignment:
| Q |
15 |
actaagcaatctaacctattattctagaactaaaaagtatggatgttttactgagcaattgctagaatggataatgtagtgtacgatgaactaatacttg |
114 |
Q |
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| T |
50471703 |
actaagcaatctaacctattattctagaactaaaaagtatggatgttttactgagcaattgctaggatggataatgcagtgtacgatgaactaatacttg |
50471802 |
T |
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| Q |
115 |
aaaataattcaaaactctaataacagtctatcactag |
151 |
Q |
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| T |
50471803 |
aaaataattcaaaactctaataacagtctatcactag |
50471839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 50471996 - 50472036
Alignment:
| Q |
208 |
acgaaataagatcttatgtttttacatcctctaggaaactg |
248 |
Q |
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| T |
50471996 |
acgaaataagatcttatgtttttacatcctctaggaaactg |
50472036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 50471887 - 50471935
Alignment:
| Q |
150 |
agtttgacaaaaaaga---agaaatattgtcatttaagaaaagtacatg |
195 |
Q |
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| T |
50471887 |
agtttgacaaaaaagaagaagaaatattgtcatttaagaaaagtacatg |
50471935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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