View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_low_29 (Length: 247)
Name: NF6176_low_29
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 38706177 - 38706399
Alignment:
| Q |
17 |
cactgacatcaatatttccatgcgcatgacttaccaaaaatataaacaaaagagtcaaccagtcaaaccccaaactataagcttagttccatcttaatcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38706177 |
cactgacatcaatatttccatgcgcatgacttaccaaaaatataaacaaaagagtcaaccagtcaaaccccaaactataagcttggttccatcttaatcc |
38706276 |
T |
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| Q |
117 |
taaagtagtaatattaattaaatttactcaaactggtgcattattcgtgtaccaagtcgtcactattccgtacccttttaatttatattttgtagactag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38706277 |
taaagtagtaatattaattaaatttactcaaactggtgcattattcgtgtaccaagtcgtcactattccgtacccttttaatttatattttgtagactag |
38706376 |
T |
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| Q |
217 |
tgcaaaccttgaagtatacctat |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
38706377 |
tgcaaaccttgaagtatacctat |
38706399 |
T |
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