View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_low_3 (Length: 674)
Name: NF6176_low_3
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 19 - 664
Target Start/End: Original strand, 31709832 - 31710476
Alignment:
| Q |
19 |
atagcaggtacgaatatgagataattcatgcttttgaagtttgtttgttgtggattgtttttgttcttatgataaattattttggttgcctctaaattta |
118 |
Q |
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| T |
31709832 |
atagcaggtatgaatatgagataattcatgcttttgaagtttgtttgttgtggattgtttttgttcttatgataaattattttggttgcctctaaatttg |
31709931 |
T |
|
| Q |
119 |
caattgttaactgatgtttttgtattatagctgcaaattatgcttgcttttcatttcgtttgcagtatgctgcggttggtatcacagaggaagaaatgca |
218 |
Q |
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| T |
31709932 |
caattgttaactgatgtttttgtattatagctgcaaattatgcttgcttttcatttcgtttgcggtatgctgcggttggtatcacagaggaagaaaggca |
31710031 |
T |
|
| Q |
219 |
aattagatgtgaagagagattatctacatggtaaagactcttattcgtgatccacacatgatacatgaccatttgatccactgctattgataaagccaaa |
318 |
Q |
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| T |
31710032 |
aatgagatgtgaagagagattatctacatggtaaagactcttattcgtgatccacacatgatacatgaccatttgatccactgctattgataaagccaaa |
31710131 |
T |
|
| Q |
319 |
aatgcagtccgatctcaacacattttgtatggcagcaatctattaagttattaactaccctgaaatgactttttgaatccagagcgaattgaaattttat |
418 |
Q |
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| T |
31710132 |
aatgcagtccgatctcaacacattttgtatggcagcaacctattaagttattaactaccctgaaatgactttttgaatccagagcgaattgaaattttat |
31710231 |
T |
|
| Q |
419 |
cacggttgattttccgtgttaaagatcgtattattctacatttagttttgctgctcagagagactagtcaaccacaatgcaatatttgagacc--ctcat |
516 |
Q |
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||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
31710232 |
cacagttgattttccgtgttaaagatcgtattatactacatttagttttgctgctcagagagactaatcaaccacaatgcaatatttgagaccctctcat |
31710331 |
T |
|
| Q |
517 |
atatcttgcaagtgggtaccttgtttgtatccttggatgctgccattcacttaagttaaaaggatcagtaaattctatttgcttcctggaaaatttggcg |
616 |
Q |
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||||||||||||||||||||| |||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31710332 |
atatcttgcaagtgggtacctcgtttttatccttgga---tgccattcacttacgttaaaaggatcagtaaattctatttgcttcctggaaaatttggcg |
31710428 |
T |
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| Q |
617 |
ctgagacatttgctttgcactgaattggattctgattcctgacctttg |
664 |
Q |
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| T |
31710429 |
ctgagacatttgctttgcactgaattggattctgattcctgacctttg |
31710476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 136 - 327
Target Start/End: Original strand, 85744 - 85947
Alignment:
| Q |
136 |
ttttgtattatagctgcaaattatgcttgcttttcatttcgtttgcagtatgctgcgg-------ttggtatcacagaggaagaaatgcaaattagatgt |
228 |
Q |
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|||| |||||||| |||||||||||||||||||||||||| ||| ||| ||| ||||| | ||||||||||||||||||| ||||| ||| || |
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| T |
85744 |
ttttttattatagttgcaaattatgcttgcttttcatttcattttcagcatgttgcggtatatactgggtatcacagaggaagaaaggcaaaagagacgt |
85843 |
T |
|
| Q |
229 |
gaagagagattatctacatggtaaagactcttat----tcgtgatccacacatgatacatgaccatttgatccactgctattgataaagccaaa-aatgc |
323 |
Q |
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| T |
85844 |
ggagagatattatctacgaggtaaagattctgattgaatgataatccatgcatgatacatgaccttttgatctactgctattgataaagcaaaataatgc |
85943 |
T |
|
| Q |
324 |
agtc |
327 |
Q |
| |
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|||| |
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|
| T |
85944 |
agtc |
85947 |
T |
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