View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_low_30 (Length: 245)
Name: NF6176_low_30
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 24321040 - 24320947
Alignment:
| Q |
135 |
gtaataagggagggttgacacctaaaaacgaaaaagaatttcgaagttattgaatgtttctaaacatacaagcctcatatatgtcattagaaag |
228 |
Q |
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| T |
24321040 |
gtaataagggagggttgacacctaaaaacgaaaaagaatttcgaagttattgaatgtttctaaacatacaagcctcatatatgtcataagaaag |
24320947 |
T |
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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 24321167 - 24321117
Alignment:
| Q |
8 |
ataatactaaatatatatacaataactggggtaaagtcaagtgttttctgg |
58 |
Q |
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| T |
24321167 |
ataatactaaatatatatacaataactggggtaaagtcaagtgttttctgg |
24321117 |
T |
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