View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_low_31 (Length: 242)
Name: NF6176_low_31
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 23324789 - 23324573
Alignment:
| Q |
7 |
tcgaagaaaatgataattgttatcataatctttgaatgtactccgattgtcacaaagaaattcttaattcgtctagctcttgctcaaactcaacaagcat |
106 |
Q |
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| T |
23324789 |
tcgaacaaaatgataattgttatcataatctttgaatgtactccgattgtcacaaagaaattcttaattcgtctagctcttgctcaaactcaacaagcat |
23324690 |
T |
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| Q |
107 |
gccataatcttcgaaggtactccaagatgcctcgggctcaacaggtatgcctccatgatgccccatggtccaatgtattgttggcgtcatgttggtggaa |
206 |
Q |
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| T |
23324689 |
gtcataatcttcgaaggtactccaagatgcctcgggctcaacaggtatgtctccatgatgccccatgctccaatgtattgttggcgtcatgttggtggaa |
23324590 |
T |
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| Q |
207 |
tcattagatacatgatc |
223 |
Q |
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| T |
23324589 |
tcattagatacatgatc |
23324573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 23324547 - 23324459
Alignment:
| Q |
81 |
agctcttgctcaaactcaacaagcatgccataatcttcgaaggtactccaagatgcctcgggctcaacaggtatgcctccatgatgccc |
169 |
Q |
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| T |
23324547 |
agctctagctgaaactcagcaagcatgccataatcttcgactggactccaagatgcctcgtgctcaaccagtatgtttccatgatgccc |
23324459 |
T |
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