View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_low_33 (Length: 238)
Name: NF6176_low_33
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 38705808 - 38705718
Alignment:
| Q |
138 |
gggacaagccaatctaaattaaggagagtcaaacttggaccttaaaagtaatagacgtt------taaaccaactaaagtgagtttaaaag |
222 |
Q |
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| T |
38705808 |
gggacaagccaatctaaattgaggagagtcaaacttggaccttaaaagtaatagacgttcaaaccaaaaccaactaaagtgagtttaaaag |
38705718 |
T |
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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 38705920 - 38705867
Alignment:
| Q |
33 |
ttagagagaacaatcaatttagttattatactatcattttctcatcaatttggt |
86 |
Q |
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| T |
38705920 |
ttagagagaacaatcaatttagttattatactatcattttctcatcaatttggt |
38705867 |
T |
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