View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_low_35 (Length: 228)
Name: NF6176_low_35
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 13898091 - 13898308
Alignment:
| Q |
1 |
tactcgctattttcctttgtttctgccatgtttcattgtcagcagcgaaagtaccgtctccgagtaattcagaaactatgtctctgaagtagtttccttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13898091 |
tactcgctattttcctttgtttctgccatgtttcattgtcagcagcgaaagtaccgtctccgagtaattcagatactatgtctctgaagtagtttccttt |
13898190 |
T |
|
| Q |
101 |
agggaaattactaaactttgttttgagaagatgttctaaattttgaggttccgaggttacaacatagttgaggctagtgaaccatggccctctgaatcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13898191 |
agggaaattactaaactttgttttgagaagatgttctaaattttgaggttccgaggttacaacatagttgaggctagtgaaccatggccctctgaatcta |
13898290 |
T |
|
| Q |
201 |
catgttccatgatgatgt |
218 |
Q |
| |
|
|||||||||| ||||||| |
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|
| T |
13898291 |
catgttccattatgatgt |
13898308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 13887113 - 13886904
Alignment:
| Q |
1 |
tactcgctattttcctttgtttctgccatgtttcattgtcagcagcgaaagtaccgtctccgagtaattcagaaactatgtctctgaagtagtttccttt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || || |||||||| |||||||||| ||||| ||||||||| ||||| ||||| |||||||||| |
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| T |
13887113 |
tactcgctgttttcctttgtttctgccatgtttcgttatctacagcgaaaataccgtctccaagtaaatcagaaactgtgtctttgaagaagtttccttt |
13887014 |
T |
|
| Q |
101 |
agggaaattactaaactttgttttgagaagatgttctaaattttgaggttccgaggttacaacatagttgaggctagtgaaccatggccctctgaatcta |
200 |
Q |
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||||||| || | |||||||||||||||||||||||||||||||||||||| ||||||| | | |||| || ||||||||||||||| |||||||| |
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| T |
13887013 |
agggaaaatattgaactttgttttgagaagatgttctaaattttgaggttctgaggttatgatgcaattgaaacttgtgaaccatggccctttgaatcta |
13886914 |
T |
|
| Q |
201 |
catgttccat |
210 |
Q |
| |
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| ||||||| |
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| T |
13886913 |
aaggttccat |
13886904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 1035148 - 1035354
Alignment:
| Q |
1 |
tactcgctattttcctttgtttctgccatgtttcattgtcagcagcgaaagtaccgtctccgagtaattcagaaactatgtctctgaagtagtttccttt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1035148 |
tactagctattttcctttgtttctgccatgtttcattgtcagcagtgaaaataccgtctccgagtaattcagaaactatgtctctgaaatagtttccttt |
1035247 |
T |
|
| Q |
101 |
agggaaattactaaactttgttttgagaagatgttctaaattttgaggttccgaggttacaacatagttgaggctagtgaaccatggccctctgaatcta |
200 |
Q |
| |
|
||| || | | |||||||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
1035248 |
aggataaacagtgaactttgttttgagaacatgttctaaatttcgaggttc---agttataacatagttgaggctagtgaaccatgcccctctgaatcta |
1035344 |
T |
|
| Q |
201 |
catgttccat |
210 |
Q |
| |
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||||||||| |
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|
| T |
1035345 |
gatgttccat |
1035354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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