View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6176_low_4 (Length: 672)

Name: NF6176_low_4
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6176_low_4
NF6176_low_4
[»] chr3 (23 HSPs)
chr3 (20-541)||(55414408-55414929)
chr3 (558-639)||(22519196-22519276)
chr3 (558-636)||(11955528-11955606)
chr3 (573-627)||(18682510-18682564)
chr3 (567-639)||(19368941-19369013)
chr3 (575-639)||(28981817-28981881)
chr3 (568-639)||(29530561-29530632)
chr3 (573-627)||(8393584-8393638)
chr3 (574-639)||(19895645-19895710)
chr3 (558-622)||(22473650-22473714)
chr3 (568-639)||(55297343-55297414)
chr3 (577-639)||(26777850-26777912)
chr3 (568-622)||(35855220-35855274)
chr3 (575-639)||(40831926-40831990)
chr3 (573-636)||(4139350-4139413)
chr3 (568-639)||(8528103-8528174)
chr3 (573-639)||(53800520-53800586)
chr3 (568-639)||(26102150-26102221)
chr3 (575-639)||(11602164-11602228)
chr3 (558-634)||(33872211-33872287)
chr3 (583-632)||(2847341-2847390)
chr3 (585-634)||(9563259-9563308)
chr3 (585-622)||(15321260-15321297)
[»] chr4 (33 HSPs)
chr4 (558-639)||(3821198-3821279)
chr4 (558-639)||(15704117-15704198)
chr4 (558-639)||(39716717-39716798)
chr4 (568-639)||(50119957-50120028)
chr4 (573-627)||(5752472-5752526)
chr4 (574-639)||(13171647-13171712)
chr4 (558-639)||(35498532-35498613)
chr4 (567-639)||(30529278-30529350)
chr4 (568-622)||(51347504-51347558)
chr4 (558-636)||(53991554-53991632)
chr4 (558-622)||(29712375-29712440)
chr4 (558-639)||(52799031-52799112)
chr4 (558-622)||(35716315-35716379)
chr4 (558-606)||(47560251-47560299)
chr4 (568-639)||(3757742-3757813)
chr4 (573-636)||(8956937-8957000)
chr4 (573-636)||(8986909-8986972)
chr4 (568-639)||(17730449-17730520)
chr4 (568-639)||(24547347-24547418)
chr4 (573-636)||(37349807-37349870)
chr4 (573-639)||(12682755-12682821)
chr4 (558-636)||(24948289-24948367)
chr4 (558-636)||(39406234-39406312)
chr4 (573-639)||(46104200-46104266)
chr4 (568-639)||(20588578-20588649)
chr4 (568-639)||(36743201-36743272)
chr4 (573-622)||(9888906-9888955)
chr4 (575-639)||(16896008-16896072)
chr4 (573-632)||(35833420-35833479)
chr4 (562-636)||(578607-578681)
chr4 (573-639)||(2116110-2116176)
chr4 (568-636)||(43021908-43021976)
chr4 (573-636)||(50033702-50033764)
[»] chr5 (16 HSPs)
chr5 (558-639)||(3088031-3088112)
chr5 (558-639)||(33709813-33709894)
chr5 (558-639)||(25698717-25698798)
chr5 (558-639)||(30140508-30140589)
chr5 (558-639)||(41689281-41689362)
chr5 (568-639)||(30754425-30754496)
chr5 (568-639)||(36886968-36887039)
chr5 (558-638)||(12422345-12422425)
chr5 (573-636)||(6305452-6305515)
chr5 (573-636)||(43138549-43138612)
chr5 (558-636)||(12592471-12592549)
chr5 (573-622)||(754461-754510)
chr5 (574-639)||(17643385-17643450)
chr5 (588-638)||(42977833-42977883)
chr5 (558-611)||(26602196-26602249)
chr5 (588-639)||(34715632-34715683)
[»] chr1 (23 HSPs)
chr1 (558-639)||(16300395-16300476)
chr1 (558-639)||(47134710-47134791)
chr1 (558-636)||(33075659-33075737)
chr1 (558-639)||(52306075-52306156)
chr1 (558-636)||(22198910-22198988)
chr1 (558-639)||(1367297-1367378)
chr1 (558-622)||(1826799-1826863)
chr1 (568-639)||(46626324-46626395)
chr1 (558-636)||(29844884-29844962)
chr1 (558-639)||(4890104-4890185)
chr1 (558-639)||(17364603-17364684)
chr1 (558-639)||(29188300-29188381)
chr1 (558-639)||(33359706-33359787)
chr1 (574-639)||(19322344-19322409)
chr1 (573-639)||(5426237-5426303)
chr1 (574-636)||(38894777-38894839)
chr1 (559-636)||(10766193-10766270)
chr1 (558-636)||(42678380-42678458)
chr1 (573-622)||(28570746-28570795)
chr1 (575-639)||(19400754-19400818)
chr1 (575-639)||(50557850-50557913)
chr1 (568-626)||(10698131-10698189)
chr1 (575-639)||(51971272-51971335)
[»] scaffold0009 (2 HSPs)
scaffold0009 (558-636)||(225441-225519)
scaffold0009 (568-622)||(108563-108617)
[»] chr7 (22 HSPs)
chr7 (558-639)||(39651148-39651229)
chr7 (558-639)||(11840447-11840528)
chr7 (558-639)||(21600970-21601051)
chr7 (558-636)||(29467757-29467835)
chr7 (558-639)||(39276619-39276700)
chr7 (573-639)||(9143497-9143563)
chr7 (558-639)||(17169030-17169111)
chr7 (558-639)||(21670792-21670873)
chr7 (558-639)||(29684113-29684194)
chr7 (573-627)||(688084-688138)
chr7 (558-636)||(3791485-3791563)
chr7 (573-639)||(49146122-49146188)
chr7 (558-639)||(27737741-27737822)
chr7 (558-639)||(48529933-48530014)
chr7 (568-639)||(35156995-35157066)
chr7 (568-622)||(44804536-44804590)
chr7 (573-636)||(24684636-24684699)
chr7 (568-639)||(34872185-34872256)
chr7 (573-639)||(4848369-4848436)
chr7 (572-639)||(31899985-31900052)
chr7 (583-622)||(42684816-42684855)
chr7 (586-622)||(47175507-47175543)
[»] chr2 (14 HSPs)
chr2 (558-639)||(10050189-10050270)
chr2 (558-636)||(17836973-17837051)
chr2 (558-639)||(28607227-28607308)
chr2 (540-636)||(18096480-18096575)
chr2 (558-636)||(32677186-32677264)
chr2 (558-639)||(2952763-2952844)
chr2 (558-639)||(9545775-9545856)
chr2 (540-636)||(9920912-9921009)
chr2 (558-639)||(24520872-24520953)
chr2 (568-639)||(19486205-19486276)
chr2 (558-639)||(4292782-4292863)
chr2 (568-639)||(10876571-10876640)
chr2 (556-639)||(19486111-19486194)
chr2 (568-639)||(42781027-42781098)
[»] chr6 (14 HSPs)
chr6 (540-622)||(4897511-4897596)
chr6 (558-639)||(15045546-15045627)
chr6 (573-627)||(6969307-6969361)
chr6 (558-639)||(1218524-1218605)
chr6 (558-639)||(24443933-24444014)
chr6 (582-639)||(9981259-9981316)
chr6 (573-639)||(4107975-4108041)
chr6 (558-639)||(18323841-18323922)
chr6 (568-639)||(9737752-9737823)
chr6 (573-639)||(28573828-28573894)
chr6 (555-632)||(34316954-34317031)
chr6 (587-639)||(25529276-25529328)
chr6 (575-639)||(33328277-33328341)
chr6 (575-639)||(35133197-35133260)
[»] scaffold0385 (1 HSPs)
scaffold0385 (547-636)||(8303-8394)
[»] scaffold0057 (1 HSPs)
scaffold0057 (558-639)||(20579-20660)
[»] chr8 (25 HSPs)
chr8 (574-639)||(41972978-41973043)
chr8 (568-639)||(36776420-36776491)
chr8 (558-639)||(18378802-18378883)
chr8 (568-639)||(24053930-24054001)
chr8 (575-639)||(40616094-40616158)
chr8 (573-636)||(8760722-8760785)
chr8 (568-639)||(25346050-25346121)
chr8 (573-636)||(25836268-25836331)
chr8 (574-636)||(40587695-40587757)
chr8 (574-639)||(41534248-41534313)
chr8 (573-636)||(1942810-1942873)
chr8 (573-639)||(7389219-7389285)
chr8 (573-622)||(8162792-8162841)
chr8 (554-639)||(9472154-9472238)
chr8 (575-639)||(25620714-25620778)
chr8 (575-639)||(44389005-44389069)
chr8 (575-639)||(45435013-45435077)
chr8 (573-636)||(32844170-32844233)
chr8 (568-639)||(42245732-42245803)
chr8 (573-639)||(4466420-4466486)
chr8 (558-625)||(41152674-41152743)
chr8 (573-639)||(25616497-25616564)
chr8 (558-632)||(19243241-19243315)
chr8 (558-632)||(19316425-19316499)
chr8 (540-632)||(45298259-45298350)
[»] scaffold0759 (1 HSPs)
scaffold0759 (573-627)||(5903-5957)
[»] scaffold0051 (1 HSPs)
scaffold0051 (573-639)||(62083-62149)
[»] scaffold0069 (1 HSPs)
scaffold0069 (558-625)||(11779-11846)
[»] scaffold0381 (1 HSPs)
scaffold0381 (573-622)||(9590-9639)


Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 20 - 541
Target Start/End: Original strand, 55414408 - 55414929
Alignment:
Q  20 atcaccggaagatggagtccttccagtgcagatcgtgcggcagggaggctcctgggctacggtacggtgacaaacataataaacggagggcttgaatgcg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  55414408 atcaccggaagatggagtccttccagtgcagatcgtgcggcagggaggctcccgggatacggtacggtgaccaacataataaacggagggcttgaatgcg 55414507  T
Q  120 gaagaggacaggatggaagagtgcaggatcgaattggattttacaagagatattgtgacatacttggagttggatacggagacaatcttgattgtttttc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  55414508 gaagaggacaggatggaagagtgcaggatcgaattggattttacaagagatattgtgacatacttggagttggatatggagacaatcttgattgtttttc 55414607  T
Q  220 tcaaaggcctttcggatcttcactttcactatcatccctcttcctcaactccatcgacacctagctaccttgtctttctcttaattattattaaaataaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55414608 tcaaaggcctttcggatcttcactttcactatcatccctcttcctcaactccatcgacacctagctaccttgtctttctcttaattattattaaaataaa 55414707  T
Q  320 taaatcaacgtgaatcacggttcacccagtaaagggtagtagtaattaggttgggtctacatgtttcccattttttattgttgagggatgacactttcaa 419  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55414708 taaatcaacgtgaatcacggttcacccagtcaagggtagtagtaattaggttgggtctacatgtttcccattttttattgttgagggatgacactttcaa 55414807  T
Q  420 acataaataagattacttgattaaaaaacgtccaacctgagacaaaataattatgaacctggattccttatattgcatttacaaaaatcagacattacac 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55414808 acataaataagattacttgattaaaaaacgtccaacctgagacaaaataattatgaacctggattccttatattgcatttacaaaaatcagacattacac 55414907  T
Q  520 acatcaattaatctcggccaat 541  Q
    |||| |||||||||||||||||    
T  55414908 acattaattaatctcggccaat 55414929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 22519196 - 22519276
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  22519196 tacttctattaaaag-aatgtccattgaatttaccattttgcccctataaggggcaatttagtaaattattaattggttgag 22519276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 558 - 636
Target Start/End: Complemental strand, 11955606 - 11955528
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  11955606 tacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 11955528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 573 - 627
Target Start/End: Original strand, 18682510 - 18682564
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac 627  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18682510 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac 18682564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 567 - 639
Target Start/End: Complemental strand, 19369013 - 19368941
Alignment:
Q  567 taaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  19369013 taaaagaaatgtcccttgattttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 19368941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 575 - 639
Target Start/End: Complemental strand, 28981881 - 28981817
Alignment:
Q  575 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  28981881 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 28981817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 639
Target Start/End: Complemental strand, 29530632 - 29530561
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||  |||| ||||||||||    
T  29530632 aaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctacttattggttgag 29530561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 573 - 627
Target Start/End: Original strand, 8393584 - 8393638
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac 627  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8393584 taatgtcctttgaatttaccattttgcccctataaggggcaatttggtaaattac 8393638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 574 - 639
Target Start/End: Complemental strand, 19895710 - 19895645
Alignment:
Q  574 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||| |||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||    
T  19895710 aatgtccattgaatttaccattttgcccttataaagggcaatttggtaaattagtaattggttgag 19895645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 558 - 622
Target Start/End: Original strand, 22473650 - 22473714
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 622  Q
    ||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||    
T  22473650 tacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaa 22473714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 639
Target Start/End: Complemental strand, 55297414 - 55297343
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||||||| |||||||||||||| ||||||||| ||| |||||||||||||| ||||||||||||    
T  55297414 aaaagaaatgtccctcgaatttaccattttacccctataaagggtaatttggtaaattattaattggttgag 55297343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 577 - 639
Target Start/End: Complemental strand, 26777912 - 26777850
Alignment:
Q  577 gtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||| |||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  26777912 gtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 26777850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 568 - 622
Target Start/End: Original strand, 35855220 - 35855274
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 622  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35855220 aaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaa 35855274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 575 - 639
Target Start/End: Complemental strand, 40831990 - 40831926
Alignment:
Q  575 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||||||||||||| |||||||||| ||||| |||||  |||||||||||||||    
T  40831990 atgtcccttgaatttaccattttgctcctataagggacaattcggtaatctactaattggttgag 40831926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 573 - 636
Target Start/End: Complemental strand, 4139413 - 4139350
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    |||||||| |||| |||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  4139413 taatgtccattgattttaccattttgtccctattaggggcaatttggtaaattacaaattggtt 4139350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 568 - 639
Target Start/End: Complemental strand, 8528174 - 8528103
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| |||||||||||||||||||||| || |||||||||||||||||||||||  || | ||||||||||    
T  8528174 aaaagaaatgtcccttgaatttaccattctgtccctataaggggcaatttggtaatatatttattggttgag 8528103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 573 - 639
Target Start/End: Original strand, 53800520 - 53800586
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||| |||| ||||||||||||||| ||  ||||||||||||||||||||| |||||||||||    
T  53800520 taatgtccattgattttaccattttgcccttaggaggggcaatttggtaaattacaaattggttgag 53800586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 568 - 639
Target Start/End: Complemental strand, 26102221 - 26102150
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||  | || ||||||||||    
T  26102221 aaaagaaatgtcctttgaatttaccattttgcccctataagaggtaatttggtaatctgcttattggttgag 26102150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 575 - 639
Target Start/End: Complemental strand, 11602228 - 11602164
Alignment:
Q  575 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||| |||| ||||||||||||||||||||||||||||||  ||||  || ||||||||||||    
T  11602228 atgtccgttgattttaccattttgcccctataaggggcaattcagtaatctattaattggttgag 11602164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 634
Target Start/End: Original strand, 33872211 - 33872287
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattgg 634  Q
    |||| |||| ||||| |||||||  |||||||||||||||| ||||| ||||| || |||||||||||| |||||||    
T  33872211 tactaatataaaaagaaatgtccgatgaatttaccattttgtccctagaagggccattttggtaaattaataattgg 33872287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 632
Target Start/End: Complemental strand, 2847390 - 2847341
Alignment:
Q  583 tgaatttaccattttgcccctataaggggcaatttggtaaattactaatt 632  Q
    ||||||| ||||||||||||||  |||||||||||||||| |||||||||    
T  2847390 tgaattttccattttgcccctaagaggggcaatttggtaatttactaatt 2847341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 585 - 634
Target Start/End: Original strand, 9563259 - 9563308
Alignment:
Q  585 aatttaccattttgcccctataaggggcaatttggtaaattactaattgg 634  Q
    ||||||||||||||||| || || ||||| |||||||||||| |||||||    
T  9563259 aatttaccattttgcccatagaaagggcattttggtaaattattaattgg 9563308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 585 - 622
Target Start/End: Complemental strand, 15321297 - 15321260
Alignment:
Q  585 aatttaccattttgcccctataaggggcaatttggtaa 622  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  15321297 aatttacaattttgcccctataaggggcaatttagtaa 15321260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 3821279 - 3821198
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3821279 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 3821198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 15704117 - 15704198
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||| ||||||||||| | || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15704117 tacttatataaaaagtaatgttctttaaatttaccattttgcccctataaggggaaatttggtaaattactaattggttgag 15704198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 39716798 - 39716717
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||    
T  39716798 tacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttgag 39716717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 568 - 639
Target Start/End: Complemental strand, 50120028 - 50119957
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  50120028 aaaaggaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 50119957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 573 - 627
Target Start/End: Original strand, 5752472 - 5752526
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac 627  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5752472 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac 5752526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 574 - 639
Target Start/End: Original strand, 13171647 - 13171712
Alignment:
Q  574 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  13171647 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 13171712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 35498613 - 35498532
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||| |||| ||||| |||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||    
T  35498613 tactaatataaaaagaaatggcccttgaatttatcattttgcccctataaaggacaatttggtaaattactaattggttgag 35498532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 567 - 639
Target Start/End: Complemental strand, 30529350 - 30529278
Alignment:
Q  567 taaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  30529350 taaaagaaatatcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 30529278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 568 - 622
Target Start/End: Original strand, 51347504 - 51347558
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 622  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51347504 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 51347558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 558 - 636
Target Start/End: Complemental strand, 53991632 - 53991554
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  53991632 tacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 53991554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 558 - 622
Target Start/End: Original strand, 29712375 - 29712440
Alignment:
Q  558 tacttatattaaaa-gtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 622  Q
    |||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29712375 tacttatattaaaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaa 29712440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 52799031 - 52799112
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| || ||||||||||||| ||||||| |||||||||||||||||||| | ||||| ||||    
T  52799031 tacttatattaaaagaaatgtcctttaaatttaccattttacccctattaggggcaatttggtaaattaattattggctgag 52799112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 558 - 622
Target Start/End: Complemental strand, 35716379 - 35716315
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 622  Q
    ||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||    
T  35716379 tacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaa 35716315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 558 - 606
Target Start/End: Complemental strand, 47560299 - 47560251
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctata 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47560299 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctata 47560251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 639
Target Start/End: Original strand, 3757742 - 3757813
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  3757742 aaaagaaatgttcattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 3757813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 573 - 636
Target Start/End: Original strand, 8956937 - 8957000
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  8956937 taatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8957000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 573 - 636
Target Start/End: Original strand, 8986909 - 8986972
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  8986909 taatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8986972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 639
Target Start/End: Original strand, 17730449 - 17730520
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  17730449 aaaagaaatgtgctttgaatttaccattttgctcctataaggggcaatttggtaatctactaattggttgag 17730520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 639
Target Start/End: Original strand, 24547347 - 24547418
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||  || | ||||||||||    
T  24547347 aaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggttgag 24547418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 573 - 636
Target Start/End: Original strand, 37349807 - 37349870
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  37349807 taatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 37349870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 573 - 639
Target Start/End: Complemental strand, 12682821 - 12682755
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||| |||| ||||||||||||||||||| ||||||||||||||||||||  |||||||||||    
T  12682821 taatgtccattgattttaccattttgcccctatgaggggcaatttggtaaattataaattggttgag 12682755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 558 - 636
Target Start/End: Complemental strand, 24948367 - 24948289
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||| ||||| ||||||| |||||||||||||||||| ||||||||||||||||||| ||  |||| |||||||    
T  24948367 tacttatataaaaagaaatgtcctttgaatttaccattttgctcctataaggggcaatttggaaatctacttattggtt 24948289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 558 - 636
Target Start/End: Complemental strand, 39406312 - 39406234
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||  |||| |||||||    
T  39406312 tacttatataaaaagaaatgttccttgaatttaccatttagcccctataaggggtaatttggtaatctacttattggtt 39406234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 573 - 639
Target Start/End: Original strand, 46104200 - 46104266
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||| |||| |||||||||||||||| || ||||||||||||||||||||| |||||||||||    
T  46104200 taatgtccattgattttaccattttgccccaatgaggggcaatttggtaaattacaaattggttgag 46104266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 568 - 639
Target Start/End: Original strand, 20588578 - 20588649
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||   ||| ||||||||||    
T  20588578 aaaagaaatgtcccttgaattcaccattttgcctctataaggggcaatttggtaatccacttattggttgag 20588649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 568 - 639
Target Start/End: Complemental strand, 36743272 - 36743201
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| |||||||||| |||||||||||||| | |||||||||||||||||||||  |||| ||||||||||    
T  36743272 aaaagaaatgtcccttaaatttaccattttgtctctataaggggcaatttggtaatctacttattggttgag 36743201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 573 - 622
Target Start/End: Complemental strand, 9888955 - 9888906
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 622  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  9888955 taatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 9888906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 575 - 639
Target Start/End: Original strand, 16896008 - 16896072
Alignment:
Q  575 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||||||  || ||||||||||||    
T  16896008 atgtcccttgaatttacaattttgcccttataaggggctatttggtaatctattaattggttgag 16896072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 573 - 632
Target Start/End: Complemental strand, 35833479 - 35833420
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaatt 632  Q
    |||||||| |||| ||||||||||||||||||| |||||||||||||||| | |||||||    
T  35833479 taatgtccattgattttaccattttgcccctatgaggggcaatttggtaattcactaatt 35833420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 562 - 636
Target Start/End: Complemental strand, 578681 - 578607
Alignment:
Q  562 tatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||||| |||||| | |  ||||||||||||||||||||||||| |||||||||||  |||| |||||||    
T  578681 tatattaaaagaaatgtctcattgatttaccattttgcccctataagggacaatttggtaatctacttattggtt 578607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 573 - 639
Target Start/End: Original strand, 2116110 - 2116176
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||| |||| |||||||||||| || ||  ||||||||||||||||||||  |||||||||||    
T  2116110 taatgtccattgattttaccattttgtccttaggaggggcaatttggtaaattataaattggttgag 2116176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 636
Target Start/End: Original strand, 43021908 - 43021976
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||| ||||| ||||||||||||||| ||||| |||| ||| ||||||||||||  |||| |||||||    
T  43021908 aaaagaaatgttccttgaatttaccatcttgcctctattaggtgcaatttggtaatctacttattggtt 43021976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 636
Target Start/End: Original strand, 50033702 - 50033764
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||  ||||||||||||||||||| ||||| ||||||||||||||  |||| |||||||    
T  50033702 taatgtcctatgaatttaccattttgcccttataa-gggcaatttggtaatctacttattggtt 50033764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 3088112 - 3088031
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3088112 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 3088031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 33709894 - 33709813
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||    
T  33709894 tacttatattaaaattaatgtcccttgaatttaccattttacccctataaagggcaatttggtaaattagtaattggttgag 33709813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 25698798 - 25698717
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||    
T  25698798 tacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttgag 25698717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 30140508 - 30140589
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  30140508 tacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggtaatttggtaaattactaattggttgag 30140589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 41689281 - 41689362
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||| | ||||| ||||    
T  41689281 tacttatattaaaagaaatgtcctttgaatttaccattttgcccctattatgggcaatttggtaaattaattattggctgag 41689362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 639
Target Start/End: Original strand, 30754425 - 30754496
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  30754425 aaaagaaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 30754496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 639
Target Start/End: Complemental strand, 36887039 - 36886968
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||| |||||    
T  36887039 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattgattgag 36886968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 558 - 638
Target Start/End: Complemental strand, 12422425 - 12422345
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttga 638  Q
    |||| |||| |||| | |||||| |||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  12422425 tactaatataaaaattcatgtcctttgattttaccattttgcccctataaggggcaatttggtaatctactaattggttga 12422345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 573 - 636
Target Start/End: Complemental strand, 6305515 - 6305452
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  6305515 taatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 6305452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 573 - 636
Target Start/End: Complemental strand, 43138612 - 43138549
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  43138612 taatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 43138549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 558 - 636
Target Start/End: Complemental strand, 12592549 - 12592471
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||| ||||| |||||||| ||||||||||| ||| ||||||||||||||||||||||||  |||| |||||||    
T  12592549 tacttatataaaaagaaatgtcccatgaatttaccagtttacccctataaggggcaatttggtaatctacttattggtt 12592471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 573 - 622
Target Start/End: Complemental strand, 754510 - 754461
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 622  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  754510 taatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 754461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 574 - 639
Target Start/End: Complemental strand, 17643450 - 17643385
Alignment:
Q  574 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||  || | ||||||||||    
T  17643450 aatgtcccttgaatttatcattttgcccttataaggggcaatttggtaatctatttattggttgag 17643385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 588 - 638
Target Start/End: Complemental strand, 42977883 - 42977833
Alignment:
Q  588 ttaccattttgcccctataaggggcaatttggtaaattactaattggttga 638  Q
    |||||||||||||||||||||||||||||||||||  |||| |||||||||    
T  42977883 ttaccattttgcccctataaggggcaatttggtaatctacttattggttga 42977833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 558 - 611
Target Start/End: Complemental strand, 26602249 - 26602196
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataagggg 611  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||| |||||||||    
T  26602249 tacttatataaaaagaaatgtcccttgaatttaccattttacccttataagggg 26602196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 588 - 639
Target Start/End: Original strand, 34715632 - 34715683
Alignment:
Q  588 ttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||||||||||||| |||||||||||||||||||| | ||||| ||||    
T  34715632 ttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 34715683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 16300395 - 16300476
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16300395 tacttatattaaaattaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaaattactaattggttgag 16300476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 47134710 - 47134791
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47134710 tacttatataaaaggtaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 47134791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 558 - 636
Target Start/End: Complemental strand, 33075737 - 33075659
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  33075737 tacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 33075659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 52306075 - 52306156
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||| ||||| ||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  52306075 tacttatataaaaagaaatatccctttaatttaccattttgcccctataaggggcaatttgataaattactaattggttgag 52306156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 558 - 636
Target Start/End: Complemental strand, 22198988 - 22198910
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||  |||| |||||||    
T  22198988 tacttatattaaaagaaatgtcccttgaatttatcattttgcccctataaggggcaatttggtaatctacttattggtt 22198910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 1367297 - 1367378
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||||| ||||    
T  1367297 tacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 1367378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 558 - 622
Target Start/End: Original strand, 1826799 - 1826863
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 622  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  1826799 tacttatattaaaagtaatgtcccttgaatttaccattttggctctataaggggcaatttggtaa 1826863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 568 - 639
Target Start/End: Complemental strand, 46626395 - 46626324
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  46626395 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 46626324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 558 - 636
Target Start/End: Complemental strand, 29844962 - 29844884
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  29844962 tacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29844884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 4890104 - 4890185
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| ||||||||||||||||||| |||| |||||||||||||||||||| | ||||| ||||    
T  4890104 tacttatattaaaagaaatgtcctttgaatttaccattttgcctctattaggggcaatttggtaaattaattattggctgag 4890185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 17364684 - 17364603
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||| ||| |||||||||||||||||||||||| |||||||||||||||||||| | ||||| ||||    
T  17364684 tacttatattaaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 17364603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 29188381 - 29188300
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||| | ||||| ||||    
T  29188381 tacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaattaattattggctgag 29188300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 33359706 - 33359787
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||| | ||||| ||||    
T  33359706 tacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaattaattattggctgag 33359787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 574 - 639
Target Start/End: Complemental strand, 19322409 - 19322344
Alignment:
Q  574 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||    
T  19322409 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtattctacttattggttgag 19322344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 573 - 639
Target Start/End: Original strand, 5426237 - 5426303
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||| |||| ||||||||||||||| || |||||||||||||||||||||| |||||||||||    
T  5426237 taatgtccattgattttaccattttgcccttagaaggggcaatttggtaaattacaaattggttgag 5426303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 574 - 636
Target Start/End: Original strand, 38894777 - 38894839
Alignment:
Q  574 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  38894777 aatgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 38894839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 559 - 636
Target Start/End: Original strand, 10766193 - 10766270
Alignment:
Q  559 acttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    |||||||||||||| |||||||  || ||||||||||||||||||||||||| |||||||||||  |||| |||||||    
T  10766193 acttatattaaaagaaatgtcctatggatttaccattttgcccctataagggtcaatttggtaatctacttattggtt 10766270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 558 - 636
Target Start/End: Original strand, 42678380 - 42678458
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||| ||||| |||||||| |||||||||||||||  ||||||||||||||||||| |||  |||| |||||||    
T  42678380 tacttatataaaaagaaatgtcccatgaatttaccattttatccctataaggggcaatttgataatctacttattggtt 42678458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 573 - 622
Target Start/End: Original strand, 28570746 - 28570795
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 622  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  28570746 taatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 28570795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 575 - 639
Target Start/End: Original strand, 19400754 - 19400818
Alignment:
Q  575 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||||||||||||||| ||||||||| |||| |||||  || ||||||||||||    
T  19400754 atgtcccttgaatttaccattttgcccatataaggggtaattcggtaatctattaattggttgag 19400818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 575 - 639
Target Start/End: Original strand, 50557850 - 50557913
Alignment:
Q  575 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||| |||||||||||||||| || ||||||||||||||||||||  |||||||||||||||    
T  50557850 atgtcccatgaatttaccattttgtcc-tataaggggcaatttggtaatctactaattggttgag 50557913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 568 - 626
Target Start/End: Complemental strand, 10698189 - 10698131
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 626  Q
    ||||| |||||||  | |||||||||||||||||||| |||||||| ||||||||||||    
T  10698189 aaaagaaatgtccaataaatttaccattttgcccctagaaggggcattttggtaaatta 10698131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 575 - 639
Target Start/End: Complemental strand, 51971335 - 51971272
Alignment:
Q  575 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||||||| ||||||||||| |||||||| ||| ||||||||||  || ||||||||||||    
T  51971335 atgtcccttgaagttaccattttgtccctataa-gggtaatttggtaatctattaattggttgag 51971272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 71; Significance: 8e-32; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 558 - 636
Target Start/End: Original strand, 225441 - 225519
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  225441 tacttatattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 225519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 568 - 622
Target Start/End: Original strand, 108563 - 108617
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 622  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||| ||||||||||    
T  108563 aaaagaaatgtcccttgaatttaccattttgtccccataaggggtaatttggtaa 108617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 39651229 - 39651148
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39651229 tacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattactaattggttgag 39651148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 11840528 - 11840447
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11840528 tacttctattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 11840447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 21601051 - 21600970
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21601051 tacttctattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 21600970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 558 - 636
Target Start/End: Original strand, 29467757 - 29467835
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  29467757 tacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 39276619 - 39276700
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||||    
T  39276619 tacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaaattacaaatttgttgag 39276700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 573 - 639
Target Start/End: Original strand, 9143497 - 9143563
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9143497 taatatcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaatttgttgag 9143563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 17169030 - 17169111
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||| | ||||| ||||    
T  17169030 tacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaattaattattggctgag 17169111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 21670873 - 21670792
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||  ||||||||||||||| |||| ||||||    
T  21670873 tacttatattaaaagaaatgtcccttgaatttactattttgcccctataaaggataatttggtaaattacaaatttgttgag 21670792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 29684194 - 29684113
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||| |||| ||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||    
T  29684194 tactaatataaaaagaaatgtgccttgaatttaccattttacccctataaggggcaatttggtaatctactaattggttgag 29684113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 573 - 627
Target Start/End: Original strand, 688084 - 688138
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac 627  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  688084 taatgtcctttgaatttaccattttgcccctataaggggcaatttggtaaattac 688138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 558 - 636
Target Start/End: Original strand, 3791485 - 3791563
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||||||||| |||||||  || |||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  3791485 tacttatattaaaagaaatgtcctatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 3791563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 573 - 639
Target Start/End: Complemental strand, 49146188 - 49146122
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  49146188 taatgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 49146122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 27737822 - 27737741
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||| ||||| || ||||||||||||||||||||| ||||||||| ||  |||||||||||||||||||||||||||    
T  27737822 tacttctataaaaagaaaagtcccttgaatttaccattttacccctataaaggataatttggtaaattactaattggttgag 27737741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 48530014 - 48529933
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||||||||  ||||||||||||||||||| | ||||| ||||    
T  48530014 tacttatattaaaagaaatgtcctttgaaattaccattttgcccctattgggggcaatttggtaaattaattattggctgag 48529933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 639
Target Start/End: Complemental strand, 35157066 - 35156995
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||  |||| || |||||||    
T  35157066 aaaagaaatgtcacttgaatttaccattttgcccctataaggggcaatttggtaatctacttatcggttgag 35156995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 568 - 622
Target Start/End: Original strand, 44804536 - 44804590
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 622  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44804536 aaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaa 44804590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 573 - 636
Target Start/End: Complemental strand, 24684699 - 24684636
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||  |||| |||||||    
T  24684699 taatgtcccatgaatttaccattttgcctctataaggggcaatttggtaatctacttattggtt 24684636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 568 - 639
Target Start/End: Original strand, 34872185 - 34872256
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||||| ||||| ||||||||||| |||||||||||||||||||||||  |||| ||||||||||    
T  34872185 aaaagaaatgtcctttgaacttaccattttgtccctataaggggcaatttggtaatctacttattggttgag 34872256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 573 - 639
Target Start/End: Original strand, 4848369 - 4848436
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac-taattggttgag 639  Q
    |||||||| |||| ||||||||||||||||||| ||||| |||||||||||||||  |||||||||||    
T  4848369 taatgtccattgattttaccattttgcccctatgaggggtaatttggtaaattacaaaattggttgag 4848436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 572 - 639
Target Start/End: Complemental strand, 31900052 - 31899985
Alignment:
Q  572 gtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||||||||| |||| | ||||| ||||    
T  31900052 gtaatgtcctttgaatttacaattttgcccctattaggggcaatttggtagattaattattggctgag 31899985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 622
Target Start/End: Original strand, 42684816 - 42684855
Alignment:
Q  583 tgaatttaccattttgcccctataaggggcaatttggtaa 622  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  42684816 tgaatttaccattttgcccctataaggggcattttagtaa 42684855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 622
Target Start/End: Complemental strand, 47175543 - 47175507
Alignment:
Q  586 atttaccattttgcccctataaggggcaatttggtaa 622  Q
    |||||| |||||||||||| |||||||||||||||||    
T  47175543 atttacaattttgcccctagaaggggcaatttggtaa 47175507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 8e-29; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 10050270 - 10050189
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  10050270 tacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttgataaattactaattggttgag 10050189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 558 - 636
Target Start/End: Original strand, 17836973 - 17837051
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  17836973 tacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 17837051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 28607227 - 28607308
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||  ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  28607227 tacttatattaaaataaatgtccattgaatttaccattttgtccctataaggggcaatttggtaaattacaaattggttgag 28607308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 540 - 636
Target Start/End: Original strand, 18096480 - 18096575
Alignment:
Q  540 atctatatatatacttattacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    |||||| ||||||||||| |||||||| ||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  18096480 atctatgtatatacttat-acttatataaaaagaaatgtcctttgaatttaccattttgcccctataaggggtaatttggcaaattattaattggtt 18096575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 558 - 636
Target Start/End: Complemental strand, 32677264 - 32677186
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  32677264 tacttatattaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 32677186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 2952763 - 2952844
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||||| ||||    
T  2952763 tacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 2952844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 9545856 - 9545775
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||||| ||||    
T  9545856 tacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 9545775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 540 - 636
Target Start/End: Complemental strand, 9921009 - 9920912
Alignment:
Q  540 atctatatatatacttat-tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    |||||||||||||  ||| ||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  9921009 atctatatatatatatatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 9920912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 24520872 - 24520953
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||| ||||| |||||||||||||||||  |||||||| |||||||| |||||||||||||||||||||||||||||    
T  24520872 tacttatataaaaagaaatgtcccttgaatttataattttgcctctataaggagcaatttggtaaattactaattggttgag 24520953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 568 - 639
Target Start/End: Original strand, 19486205 - 19486276
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  19486205 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 19486276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 4292863 - 4292782
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| |||||||||||||||||| ||||| | |||||||||||||||||| | ||||| ||||    
T  4292863 tacttatattaaaagaaatgtcctttgaatttaccattttgctcctattaagggcaatttggtaaattaattattggctgag 4292782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 568 - 639
Target Start/End: Complemental strand, 10876640 - 10876571
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| |||||||||||||||||||||||||||||  ||||||||||||||||||  |||| ||||||||||    
T  10876640 aaaagaaatgtcccttgaatttaccattttgcccc--taaggggcaatttggtaatctacttattggttgag 10876571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 556 - 639
Target Start/End: Complemental strand, 19486194 - 19486111
Alignment:
Q  556 attacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||| |||   ||| ||| ||||||||| |||||||||||||||||||||||||||||||  |||| ||||||||||    
T  19486194 attacttatataaaagaaaatatccattgaatttatcattttgcccctataaggggcaatttggtaatctacttattggttgag 19486111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 568 - 639
Target Start/End: Original strand, 42781027 - 42781098
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||||||||||||||| ||||||| |||| ||||||||||||||||||  || | ||||||||||    
T  42781027 aaaagaaatgtcccttgaatttatcattttgtccctgtaaggggcaatttggtaatctatttattggttgag 42781098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 540 - 622
Target Start/End: Complemental strand, 4897596 - 4897511
Alignment:
Q  540 atctatatatatacttat---tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 622  Q
    |||||| |||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4897596 atctatctatatacttatatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 4897511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 15045627 - 15045546
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||||    
T  15045627 tacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaaattacaaatttgttgag 15045546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 573 - 627
Target Start/End: Complemental strand, 6969361 - 6969307
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac 627  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6969361 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac 6969307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 1218524 - 1218605
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||| | ||||| ||||    
T  1218524 tacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaattaattattggctgag 1218605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 24443933 - 24444014
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||| ||| |||||||||||||||||||||||| |||||||||||||||||||| | ||||| ||||    
T  24443933 tacttatattaaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 24444014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 582 - 639
Target Start/End: Complemental strand, 9981316 - 9981259
Alignment:
Q  582 ttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  9981316 ttgaatttaccattttacccctataaggggcaatttggtaaattgctaattggttgag 9981259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 573 - 639
Target Start/End: Original strand, 4107975 - 4108041
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||| |||| ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||    
T  4107975 taatgtccattgattttaccatttttcccctatgaggggcaatttggtaaattacaaattggttgag 4108041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 18323841 - 18323922
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| |   |||||||||||||||| | ||||| ||||    
T  18323841 tacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaaaagcaatttggtaaattaattattggctgag 18323922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 568 - 639
Target Start/End: Complemental strand, 9737823 - 9737752
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||  || | ||||||||||    
T  9737823 aaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttgataatctatttattggttgag 9737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 573 - 639
Target Start/End: Complemental strand, 28573894 - 28573828
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||| ||| |||| ||||||||||||||||||  ||||||||||||||||||||| |||||||||||    
T  28573894 taatatcctttgattttaccattttgcccctaggaggggcaatttggtaaattacaaattggttgag 28573828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 555 - 632
Target Start/End: Original strand, 34316954 - 34317031
Alignment:
Q  555 tattacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaatt 632  Q
    ||||||| |||| |||||| |||||| |||| |||||| |||||||||||  |||||||||||||||| |||||||||    
T  34316954 tattactaatataaaaagtgatgtccattgattttacctttttgcccctaagaggggcaatttggtaatttactaatt 34317031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 587 - 639
Target Start/End: Original strand, 25529276 - 25529328
Alignment:
Q  587 tttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||||| ||||||||||||||||||||||  |||||||||||||||    
T  25529276 tttacgattttgctcctataaggggcaatttggtaatctactaattggttgag 25529328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 575 - 639
Target Start/End: Complemental strand, 33328341 - 33328277
Alignment:
Q  575 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||| || ||||||||||||||| |||| ||||||||||||||||   |||||||||||||||    
T  33328341 atgtcctttaaatttaccattttgctcctacaaggggcaatttggtagtctactaattggttgag 33328277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 575 - 639
Target Start/End: Original strand, 35133197 - 35133260
Alignment:
Q  575 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||| || |||||||||||||||| |||||| |||||||||| |||  |||||||||||||||    
T  35133197 atgtcctttaaatttaccattttgcctctataa-gggcaatttgataatctactaattggttgag 35133260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 547 - 636
Target Start/End: Complemental strand, 8394 - 8303
Alignment:
Q  547 tatatacttatta--cttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    |||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  8394 tatatacttattatacttatattaaaagaaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 20660 - 20579
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||||| ||||    
T  20660 tacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 20579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 574 - 639
Target Start/End: Original strand, 41972978 - 41973043
Alignment:
Q  574 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  41972978 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctactaattggttgag 41973043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 568 - 639
Target Start/End: Original strand, 36776420 - 36776491
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  36776420 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 36776491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 558 - 639
Target Start/End: Complemental strand, 18378883 - 18378802
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||| |||| |||||||||||||||||||| | ||||||||||    
T  18378883 tacttatattaaaagaaatgtcctttgaatttatcattttgcctctattaggggcaatttggtaaattaattattggttgag 18378802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 568 - 639
Target Start/End: Original strand, 24053930 - 24054001
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||  |||| ||||||||||    
T  24053930 aaaagaaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaatctacttattggttgag 24054001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 575 - 639
Target Start/End: Complemental strand, 40616158 - 40616094
Alignment:
Q  575 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||  |||||||||||||||    
T  40616158 atgtcccttgaatttaccattttgctcctataagaggcaatttggtaatctactaattggttgag 40616094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 573 - 636
Target Start/End: Original strand, 8760722 - 8760785
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  8760722 taatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8760785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 639
Target Start/End: Original strand, 25346050 - 25346121
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||  |||| ||||||||||    
T  25346050 aaaagaaatgtccattgaatttaccattttgcctctataaggggcaatttggtaatctacttattggttgag 25346121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 573 - 636
Target Start/End: Complemental strand, 25836331 - 25836268
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  25836331 taatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 25836268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 574 - 636
Target Start/End: Complemental strand, 40587757 - 40587695
Alignment:
Q  574 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  40587757 aatgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 40587695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 574 - 639
Target Start/End: Complemental strand, 41534313 - 41534248
Alignment:
Q  574 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||| ||||||| ||||||||||||    
T  41534313 aatgtcccatgaatttaccattttgctcctataagggacaatttgataaattattaattggttgag 41534248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 573 - 636
Target Start/End: Original strand, 1942810 - 1942873
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||  |||| |||||||    
T  1942810 taatgtcccatgaatttaccattttgcctctataaggggcaatttggtaatctacttattggtt 1942873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 573 - 639
Target Start/End: Original strand, 7389219 - 7389285
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||| |||| |||||||||||||||| |  ||||||||||||||||||||| |||||||||||    
T  7389219 taatgtccattgattttaccattttgccccaaggaggggcaatttggtaaattacaaattggttgag 7389285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 573 - 622
Target Start/End: Complemental strand, 8162841 - 8162792
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 622  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  8162841 taatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 8162792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 554 - 639
Target Start/End: Original strand, 9472154 - 9472238
Alignment:
Q  554 ttattacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||| |||  ||||| ||||||||||||| ||||||||||||| |||||| ||||||||||||||  |||| ||||||||||    
T  9472154 ttattactaataagaaaagaaatgtcccttgaaattaccattttgcctctataa-gggcaatttggtaatctacttattggttgag 9472238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 575 - 639
Target Start/End: Complemental strand, 25620778 - 25620714
Alignment:
Q  575 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||| |||| ||||| ||||||||||||| ||||||||||||||||||||| |||| ||||||    
T  25620778 atgtccattgattttactattttgcccctatgaggggcaatttggtaaattacaaattagttgag 25620714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 575 - 639
Target Start/End: Complemental strand, 44389069 - 44389005
Alignment:
Q  575 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||  || ||||||||||||    
T  44389069 atgtcccttgaatttaccatttttcccttataaggggtaatttggtaatctattaattggttgag 44389005  T

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Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 575 - 639
Target Start/End: Original strand, 45435013 - 45435077
Alignment:
Q  575 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||  |||||| || |||||    
T  45435013 atgtcacttgaatttaccattttgcccttataaggggcaatttggtaatctactaaatgattgag 45435077  T

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Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 573 - 636
Target Start/End: Original strand, 32844170 - 32844233
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 636  Q
    ||||||||| | |||||||||||||||||| |||||||||||||||||||  |||| |||||||    
T  32844170 taatgtcccataaatttaccattttgccccgataaggggcaatttggtaatctacttattggtt 32844233  T

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Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 568 - 639
Target Start/End: Complemental strand, 42245803 - 42245732
Alignment:
Q  568 aaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    ||||| |||||| |||||||| |||||||||||||||||||||| |||||| |||  |||| ||||||||||    
T  42245803 aaaagaaatgtcacttgaattcaccattttgcccctataaggggtaatttgataatctacttattggttgag 42245732  T

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Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 573 - 639
Target Start/End: Complemental strand, 4466486 - 4466420
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||| |||| ||||||||||| ||| ||  ||||||||||||||||||||| |||||||||||    
T  4466486 taatgtccattgattttaccattttacccttaggaggggcaatttggtaaattacaaattggttgag 4466420  T

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Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 558 - 625
Target Start/End: Original strand, 41152674 - 41152743
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggc--aatttggtaaatt 625  Q
    ||||||||| ||||| ||||||||||||||||||||||||| |||||| |||| |  |||||||||||||    
T  41152674 tacttatataaaaagaaatgtcccttgaatttaccattttgtccctatcagggtcctaatttggtaaatt 41152743  T

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Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 573 - 639
Target Start/End: Complemental strand, 25616564 - 25616497
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac-taattggttgag 639  Q
    |||||||| |||| ||||||||||||||| ||  |||||||||||||||||||||  |||||||||||    
T  25616564 taatgtccattgattttaccattttgcccttaagaggggcaatttggtaaattacaaaattggttgag 25616497  T

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Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 558 - 632
Target Start/End: Original strand, 19243241 - 19243315
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaatt 632  Q
    |||| |||| |||||| |||||  |||| |||||| |||||||||| | |||||||||||||||| |||||||||    
T  19243241 tactaatataaaaagtgatgtctgttgattttacctttttgcccctcttaggggcaatttggtaatttactaatt 19243315  T

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Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 558 - 632
Target Start/End: Original strand, 19316425 - 19316499
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaatt 632  Q
    |||| |||| |||||| |||||  |||| |||||| |||||||||| | |||||||||||||||| |||||||||    
T  19316425 tactaatataaaaagtgatgtctgttgattttacctttttgcccctcttaggggcaatttggtaatttactaatt 19316499  T

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Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 632
Target Start/End: Complemental strand, 45298350 - 45298259
Alignment:
Q  540 atctatatatatacttattacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaatt 632  Q
    ||||||||||||||| || ||| |||| |||| | |||| | |||| |||||| |||| ||||||  |||||||||||||||| |||||||||    
T  45298350 atctatatatatactaat-actaatataaaaaatgatgtacattgattttacctttttacccctaagaggggcaatttggtaatttactaatt 45298259  T

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Target: scaffold0759 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 573 - 627
Target Start/End: Complemental strand, 5957 - 5903
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac 627  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5957 taatgtcccatgaatttaccattttgcccctataaggggcaatttggtaaattac 5903  T

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Target: scaffold0051 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 573 - 639
Target Start/End: Original strand, 62083 - 62149
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 639  Q
    |||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  62083 taatgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 62149  T

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Target: scaffold0069 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 625
Target Start/End: Original strand, 11779 - 11846
Alignment:
Q  558 tacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatt 625  Q
    ||||||||||||||| ||||||  |||||||||||||||||||  ||| |||||||||||||||||||    
T  11779 tacttatattaaaagaaatgtcatttgaatttaccattttgcctttattaggggcaatttggtaaatt 11846  T

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Target: scaffold0381 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 573 - 622
Target Start/End: Original strand, 9590 - 9639
Alignment:
Q  573 taatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 622  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  9590 taatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 9639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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