View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6176_low_5 (Length: 669)

Name: NF6176_low_5
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6176_low_5
NF6176_low_5
[»] chr1 (27 HSPs)
chr1 (252-593)||(16976538-16976879)
chr1 (12-53)||(44738291-44738332)
chr1 (12-54)||(844974-845016)
chr1 (12-54)||(26118450-26118492)
chr1 (12-54)||(30105915-30105957)
chr1 (12-54)||(41972794-41972836)
chr1 (9-54)||(50540226-50540271)
chr1 (12-54)||(1351684-1351726)
chr1 (12-54)||(7183800-7183842)
chr1 (12-54)||(12890120-12890162)
chr1 (12-54)||(16386736-16386778)
chr1 (12-54)||(16451009-16451051)
chr1 (12-54)||(32270240-32270282)
chr1 (12-54)||(34663824-34663866)
chr1 (12-54)||(51703412-51703454)
chr1 (9-54)||(16437260-16437305)
chr1 (12-57)||(31004012-31004057)
chr1 (9-54)||(39281777-39281822)
chr1 (97-139)||(16976381-16976424)
chr1 (12-54)||(24339887-24339929)
chr1 (12-54)||(26765039-26765081)
chr1 (12-54)||(41968099-41968141)
chr1 (12-54)||(42510407-42510449)
chr1 (9-55)||(45491122-45491168)
chr1 (12-54)||(51264377-51264419)
chr1 (9-54)||(16476401-16476446)
chr1 (9-54)||(46154782-46154827)
[»] chr2 (22 HSPs)
chr2 (9-54)||(37004041-37004086)
chr2 (9-53)||(30798659-30798703)
chr2 (12-58)||(2085941-2085987)
chr2 (12-54)||(9717114-9717156)
chr2 (12-54)||(18685709-18685751)
chr2 (12-54)||(35114658-35114700)
chr2 (12-54)||(44284510-44284552)
chr2 (9-53)||(17540588-17540632)
chr2 (15-54)||(33366483-33366522)
chr2 (12-54)||(4641389-4641431)
chr2 (12-54)||(5279009-5279051)
chr2 (12-54)||(30326506-30326548)
chr2 (12-54)||(33889131-33889173)
chr2 (12-54)||(34338683-34338725)
chr2 (12-54)||(37308529-37308571)
chr2 (9-54)||(2645258-2645303)
chr2 (9-45)||(9733102-9733138)
chr2 (9-57)||(38993239-38993287)
chr2 (15-54)||(32497788-32497827)
chr2 (8-50)||(6896047-6896088)
chr2 (13-54)||(16178056-16178097)
chr2 (13-54)||(26418796-26418837)
[»] chr4 (28 HSPs)
chr4 (12-54)||(43640975-43641017)
chr4 (9-54)||(49152264-49152309)
chr4 (12-54)||(12600762-12600804)
chr4 (12-54)||(23521756-23521798)
chr4 (12-54)||(24002214-24002256)
chr4 (12-54)||(36885822-36885864)
chr4 (9-54)||(21579902-21579947)
chr4 (12-53)||(33552995-33553036)
chr4 (12-53)||(42869859-42869900)
chr4 (9-54)||(56154497-56154542)
chr4 (10-54)||(2725283-2725327)
chr4 (12-59)||(20802699-20802746)
chr4 (12-54)||(9512508-9512550)
chr4 (12-54)||(29616061-29616103)
chr4 (12-54)||(52319202-52319244)
chr4 (13-54)||(38486421-38486462)
chr4 (9-50)||(55065497-55065538)
chr4 (12-55)||(38812415-38812458)
chr4 (12-54)||(2786841-2786883)
chr4 (12-54)||(9807033-9807075)
chr4 (12-50)||(36497112-36497150)
chr4 (12-54)||(46680658-46680700)
chr4 (17-50)||(28115157-28115190)
chr4 (9-54)||(33177197-33177242)
chr4 (12-53)||(37931798-37931839)
chr4 (9-54)||(38520440-38520485)
chr4 (14-54)||(50728048-50728088)
chr4 (14-54)||(50736062-50736102)
[»] scaffold0208 (1 HSPs)
scaffold0208 (12-54)||(2519-2561)
[»] scaffold0098 (1 HSPs)
scaffold0098 (12-54)||(51312-51354)
[»] chr8 (25 HSPs)
chr8 (12-54)||(4052370-4052412)
chr8 (12-54)||(14005219-14005261)
chr8 (12-54)||(32020191-32020233)
chr8 (12-54)||(32303775-32303817)
chr8 (12-54)||(955126-955168)
chr8 (12-54)||(6386449-6386491)
chr8 (12-54)||(8673245-8673287)
chr8 (12-54)||(34063001-34063043)
chr8 (12-54)||(45446328-45446370)
chr8 (9-54)||(31731937-31731982)
chr8 (12-53)||(37664458-37664499)
chr8 (12-55)||(13407125-13407168)
chr8 (12-55)||(17805562-17805605)
chr8 (15-54)||(41709650-41709689)
chr8 (12-50)||(15001344-15001382)
chr8 (12-54)||(27103832-27103874)
chr8 (12-54)||(29563416-29563458)
chr8 (9-59)||(34101376-34101426)
chr8 (12-54)||(37861769-37861811)
chr8 (12-54)||(45113929-45113971)
chr8 (15-52)||(21272588-21272625)
chr8 (9-54)||(25478121-25478166)
chr8 (12-53)||(35225537-35225578)
chr8 (9-53)||(7395001-7395045)
chr8 (14-54)||(17520470-17520510)
[»] chr7 (26 HSPs)
chr7 (12-54)||(3922879-3922921)
chr7 (12-54)||(32873945-32873987)
chr7 (12-52)||(18470563-18470603)
chr7 (12-55)||(30849422-30849465)
chr7 (12-54)||(10932733-10932775)
chr7 (12-54)||(16962989-16963031)
chr7 (12-54)||(36769745-36769787)
chr7 (12-54)||(40753047-40753089)
chr7 (9-54)||(3892199-3892244)
chr7 (12-53)||(43158862-43158903)
chr7 (9-54)||(43189416-43189461)
chr7 (14-54)||(26994403-26994443)
chr7 (12-52)||(41211377-41211417)
chr7 (12-59)||(46408768-46408815)
chr7 (12-50)||(329352-329390)
chr7 (12-54)||(9913403-9913445)
chr7 (12-54)||(9927091-9927133)
chr7 (12-54)||(12982180-12982222)
chr7 (12-54)||(30599184-30599226)
chr7 (12-54)||(34117350-34117392)
chr7 (16-54)||(47316863-47316901)
chr7 (12-54)||(47947637-47947679)
chr7 (12-54)||(47953067-47953109)
chr7 (12-53)||(21784749-21784790)
chr7 (10-54)||(26910580-26910624)
chr7 (12-52)||(47442731-47442771)
[»] chr6 (17 HSPs)
chr6 (12-54)||(15277151-15277193)
chr6 (12-52)||(4494312-4494352)
chr6 (12-55)||(11279011-11279054)
chr6 (12-59)||(24203231-24203278)
chr6 (12-51)||(24242540-24242579)
chr6 (12-54)||(11613990-11614032)
chr6 (12-50)||(17867712-17867750)
chr6 (12-50)||(17877495-17877533)
chr6 (12-54)||(28502332-28502374)
chr6 (12-54)||(29814738-29814780)
chr6 (12-54)||(32805351-32805393)
chr6 (9-54)||(2614769-2614814)
chr6 (12-53)||(11212131-11212172)
chr6 (12-54)||(3259551-3259593)
chr6 (12-54)||(10959874-10959916)
chr6 (12-54)||(17443136-17443178)
chr6 (9-54)||(32410063-32410108)
[»] chr5 (19 HSPs)
chr5 (12-54)||(2351553-2351595)
chr5 (12-54)||(4818321-4818363)
chr5 (12-54)||(35701150-35701192)
chr5 (12-52)||(11963216-11963256)
chr5 (12-59)||(29241261-29241308)
chr5 (12-54)||(7208396-7208438)
chr5 (12-54)||(24181790-24181832)
chr5 (9-54)||(21739334-21739379)
chr5 (9-54)||(41790640-41790685)
chr5 (12-59)||(20119639-20119686)
chr5 (15-54)||(40182337-40182376)
chr5 (12-54)||(548221-548263)
chr5 (12-54)||(7523044-7523086)
chr5 (12-54)||(7725989-7726031)
chr5 (12-54)||(31880242-31880284)
chr5 (8-50)||(37148750-37148792)
chr5 (12-53)||(5673018-5673059)
chr5 (9-54)||(6284477-6284522)
chr5 (14-59)||(22432473-22432518)
[»] chr3 (20 HSPs)
chr3 (16-54)||(2134944-2134982)
chr3 (12-54)||(29584749-29584791)
chr3 (12-53)||(21221529-21221570)
chr3 (12-59)||(34026551-34026598)
chr3 (15-54)||(47958604-47958643)
chr3 (12-54)||(5442165-5442207)
chr3 (12-54)||(20254949-20254991)
chr3 (12-54)||(20609802-20609844)
chr3 (12-54)||(26282556-26282598)
chr3 (16-54)||(40083195-40083233)
chr3 (12-54)||(43175443-43175485)
chr3 (9-54)||(22484908-22484953)
chr3 (12-53)||(44116829-44116870)
chr3 (12-52)||(42636557-42636597)
chr3 (15-54)||(53557967-53558006)
chr3 (12-54)||(1344876-1344918)
chr3 (12-54)||(4851625-4851667)
chr3 (12-54)||(28675664-28675706)
chr3 (12-54)||(51259949-51259991)
chr3 (12-52)||(3864843-3864883)
[»] scaffold0014 (1 HSPs)
scaffold0014 (9-54)||(101822-101867)
[»] scaffold0169 (2 HSPs)
scaffold0169 (12-54)||(12717-12759)
scaffold0169 (12-54)||(18235-18277)
[»] scaffold0054 (1 HSPs)
scaffold0054 (12-54)||(23450-23492)
[»] scaffold0003 (1 HSPs)
scaffold0003 (12-54)||(338760-338802)
[»] scaffold0004 (1 HSPs)
scaffold0004 (12-53)||(373130-373171)
[»] scaffold0360 (1 HSPs)
scaffold0360 (12-54)||(15543-15585)
[»] scaffold0280 (1 HSPs)
scaffold0280 (8-50)||(13863-13905)
[»] scaffold0050 (1 HSPs)
scaffold0050 (12-50)||(43129-43167)
[»] scaffold0025 (1 HSPs)
scaffold0025 (12-50)||(5620-5658)
[»] scaffold0027 (1 HSPs)
scaffold0027 (12-52)||(15047-15087)


Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 252 - 593
Target Start/End: Original strand, 16976538 - 16976879
Alignment:
Q  252 tggcatcattagcaacaaatttctgcggtttcatcttcttctttcccattggtctccatcgtttactctcatcttcctctctctatctccacaacccttc 351  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16976538 tggcatcattagcaacaaatttctgcggtttcatcttcttcttccccattggtctccatcgtttactctcatcttcctctctctatctccacaacccttc 16976637  T
Q  352 tcacttccgatccaaactctggtatctctccgacccaaactggaaaaatcttgatctctatcttctcctcatagccttaccaatcgcttcattctcagaa 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16976638 tcacttccgatccaaactctggtatctctccgacccaaactggaaaaatcttgatctctatcttctcctcatagccttaccaatcgcttcattctcagaa 16976737  T
Q  452 tttttcatctttctctctttctccaaccaccccactttccgtttctcattcttccaacaatctttcactcttttaactttctgggtcttgatcatattga 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16976738 tttttcatctttctctctttctccaaccaccccactttccgtttctcattcttccaacaatctttcactcttttagctttctgggtcttgatcatattga 16976837  T
Q  552 tcattggattggaatatgttaactctttgcatgttagtgata 593  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16976838 tcattggattggaatatgttaactctttgcatgttagtgata 16976879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 44738291 - 44738332
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacaca 53  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44738291 tactgttctgtctagtacttgctgttttgcaaaccaaacaca 44738332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 844974 - 845016
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  844974 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 845016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 26118450 - 26118492
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  26118450 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 26118492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 30105915 - 30105957
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  30105915 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 30105957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 41972836 - 41972794
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  41972836 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 41972794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 50540271 - 50540226
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  50540271 ttatactgttctgtcaagtacttactgttttgcaaaccaaacacac 50540226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 1351684 - 1351726
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  1351684 tactgttctgtcaagtacttactgttttgcaaaccaaacacac 1351726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 7183842 - 7183800
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  7183842 tactgttctgtccagtacttactgttttgcaaaccaaacacac 7183800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 12890162 - 12890120
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  12890162 tactgttctgtctagtacttactattttgcaaaccaaacacac 12890120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 16386778 - 16386736
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| | ||||||||||||||||||||||||||||    
T  16386778 tactgttctgtccaatacttgctgttttgcaaaccaaacacac 16386736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 16451051 - 16451009
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  16451051 tactgttctgtccagtacttactgttttgcaaaccaaacacac 16451009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 32270282 - 32270240
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  32270282 tactgttttgtccagtacttgctgttttgcaaaccaaacacac 32270240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 34663866 - 34663824
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  34663866 tactgttctgtccagtacttactgttttgcaaaccaaacacac 34663824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 51703412 - 51703454
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  51703412 tactgttttgtccagtacttgctgttttgcaaaccaaacacac 51703454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 16437305 - 16437260
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||    
T  16437305 ttatactgttctgtccagtatttgctgttttacaaaccaaacacac 16437260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 31004057 - 31004012
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacacaca 57  Q
    |||||||||||  |||||||||||||||||||||||||| ||||||    
T  31004057 tactgttctgtacagtacttgctgttttgcaaaccaaacgcacaca 31004012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 39281822 - 39281777
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||||||    
T  39281822 ttatactattctgtccagtacttactgttttgcaaaccaaacacac 39281777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 16976381 - 16976424
Alignment:
Q  97 tcgccaaaatcacttaaattt-aaagtcacaaagtatttcttgt 139  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||    
T  16976381 tcgccaaaatcacttaaatttaaaagtcacaaagtatctcttgt 16976424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 24339887 - 24339929
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| |||| ||||||||||||| |||||||||||    
T  24339887 tactgttctgtccagtatttgctgttttgcagaccaaacacac 24339929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 26765039 - 26765081
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| |||||||||||| |||||||||    
T  26765039 tactgttctgtccagtacttactgttttgcaaatcaaacacac 26765081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 41968099 - 41968141
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| || |||| ||||||||||||||||||||||    
T  41968099 tactgttctgtccagcacttactgttttgcaaaccaaacacac 41968141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 42510449 - 42510407
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| |||||||||||| |||||||||    
T  42510449 tactgttctgtccagtacttactgttttgcaaatcaaacacac 42510407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 45491122 - 45491168
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacaca 55  Q
    ||||| ||||||||| |||| ||||||||||||| ||||||||||||    
T  45491122 ttatattgttctgtccagtaattgctgttttgcataccaaacacaca 45491168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 51264419 - 51264377
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| | ||||||||| ||||||||||||||||||    
T  51264419 tactgttctgtccaatacttgctgatttgcaaaccaaacacac 51264377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 16476401 - 16476446
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||| |||| |||| ||||||| ||||||||||||||||||||||    
T  16476401 ttatattgttatgtccagtacttactgttttgcaaaccaaacacac 16476446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 46154827 - 46154782
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||| |||| ||||||| ||||||||||||| ||||||||    
T  46154827 ttatactgttttgtccagtacttactgttttgcaaactaaacacac 46154782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 37004041 - 37004086
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37004041 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 37004086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 30798659 - 30798703
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacaca 53  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  30798659 ttatactgttctgtccagtacttgctgttttgcaaaccaaacaca 30798703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 2085987 - 2085941
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacacacaa 58  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  2085987 tactgttctgtccagtacttgctgttttgcaaaccaaacacatacaa 2085941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 9717156 - 9717114
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  9717156 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 9717114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 18685751 - 18685709
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  18685751 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 18685709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 35114700 - 35114658
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  35114700 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 35114658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 44284552 - 44284510
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  44284552 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 44284510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 17540632 - 17540588
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacaca 53  Q
    |||||||||||| || |||||||||||||||||||||||||||||    
T  17540632 ttatactgttctatccagtacttgctgttttgcaaaccaaacaca 17540588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 33366522 - 33366483
Alignment:
Q  15 tgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  33366522 tgttctgtccagtacttgctgttttgcaaaccaaacacac 33366483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 4641431 - 4641389
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| |||||||||||||||||||| |||||||||    
T  4641431 tactgttctgtccagtacttgctgttttgcaaagcaaacacac 4641389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 5279009 - 5279051
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  5279009 tactgttctgtcaagtacttactgttttgcaaaccaaacacac 5279051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 30326506 - 30326548
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| |||||||||| |||||||||||||||||||    
T  30326506 tactgttctgtccagtacttgctcttttgcaaaccaaacacac 30326548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 33889173 - 33889131
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  33889173 tactgttctgtccagtacttactgttttgcaaaccaaacacac 33889131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 34338725 - 34338683
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| |||||||| |||||||||||||||||||||    
T  34338725 tactgttctgtccagtacttgttgttttgcaaaccaaacacac 34338683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 37308571 - 37308529
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| |||||||| |||||||||||||||||||||    
T  37308571 tactgttctgtccagtacttgttgttttgcaaaccaaacacac 37308529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 2645258 - 2645303
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| || |||||||| |||||||||||||||||||||    
T  2645258 ttatactgttctatcaagtacttgttgttttgcaaaccaaacacac 2645303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 9733102 - 9733138
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaac 45  Q
    ||||||||||||||| |||||||||||||||||||||    
T  9733102 ttatactgttctgtccagtacttgctgttttgcaaac 9733138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 38993239 - 38993287
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacacaca 57  Q
    ||||| ||||||||| ||||||| || ||||||||||||||||||||||    
T  38993239 ttatattgttctgtccagtacttactattttgcaaaccaaacacacaca 38993287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 32497827 - 32497788
Alignment:
Q  15 tgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  32497827 tgttctgtccagtacttactgttttgcaaaccaaacacac 32497788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 6896088 - 6896047
Alignment:
Q  8 attatactgttctgtctagtacttgctgttttgcaaaccaaac 50  Q
    ||||||||||||||| |||||||| ||||||||||||||||||    
T  6896088 attatactgttctgt-tagtacttactgttttgcaaaccaaac 6896047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 16178056 - 16178097
Alignment:
Q  13 actgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||||| ||||||| |||||||||||||||| |||||    
T  16178056 actgttctgtccagtacttactgttttgcaaaccaatcacac 16178097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 26418837 - 26418796
Alignment:
Q  13 actgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||||| | ||||| ||||||||||||||||||||||    
T  26418837 actgttctgtcaaatacttactgttttgcaaaccaaacacac 26418796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 43641017 - 43640975
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43641017 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 43640975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 49152264 - 49152309
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  49152264 ttatactgttctgtccagtacttgctgttttgcaaaccaaacacac 49152309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 12600804 - 12600762
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  12600804 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 12600762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 23521798 - 23521756
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  23521798 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 23521756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 24002256 - 24002214
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  24002256 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 24002214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 36885864 - 36885822
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  36885864 tactgttctgtctagtactcgctgttttgcaaaccaaacacac 36885822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 21579947 - 21579902
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  21579947 ttatactgttctgtccagtacttactgttttgcaaaccaaacacac 21579902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 33552995 - 33553036
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacaca 53  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  33552995 tactgttctgtccagtacttgctgttttgcaaaccaaacaca 33553036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 42869900 - 42869859
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacaca 53  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  42869900 tactgttctgtcgagtacttgctgttttgcaaaccaaacaca 42869859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 56154542 - 56154497
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||    
T  56154542 ttatactgttctgtccagtacttgttgttttgcaaaccaaacacac 56154497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 2725283 - 2725327
Alignment:
Q  10 tatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  2725283 tatattgttctgtccagtacttgctgttttgcaaaccaaacacac 2725327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 20802699 - 20802746
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacacacaaa 59  Q
    |||||||||||  |||||||||||||||||||||||||||||| ||||    
T  20802699 tactgttctgttcagtacttgctgttttgcaaaccaaacacacccaaa 20802746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 9512508 - 9512550
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||||||  |||||||||||||||||||||||||||||    
T  9512508 tactgttctgtcacgtacttgctgttttgcaaaccaaacacac 9512550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 29616103 - 29616061
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| |||||||||| |||||||||||||||||||    
T  29616103 tactgttctgtcaagtacttgctattttgcaaaccaaacacac 29616061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 52319244 - 52319202
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  52319244 tactgttatgtccagtacttgctgttttgcaaaccaaacacac 52319202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 38486421 - 38486462
Alignment:
Q  13 actgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  38486421 actgttctgtctagtacttactgttttgcaaacgaaacacac 38486462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 55065497 - 55065538
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaac 50  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  55065497 ttatactgttatgtccagtacttgctgttttgcaaaccaaac 55065538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 38812458 - 38812415
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacaca 55  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||    
T  38812458 tactgttttgtccggtacttgctgttttgcaaaccaaacacaca 38812415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 2786883 - 2786841
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||| |||| ||||||| ||||||||||||||||||||||    
T  2786883 tactgttatgtccagtacttactgttttgcaaaccaaacacac 2786841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 9807075 - 9807033
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| || |||||||||||||||||||    
T  9807075 tactgttctgtccagtacttactattttgcaaaccaaacacac 9807033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 36497150 - 36497112
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaac 50  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  36497150 tactgttatgtccagtacttgctgttttgcaaaccaaac 36497112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 46680658 - 46680700
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| || |||||||||||||||||||    
T  46680658 tactgttctgtccagtacttactattttgcaaaccaaacacac 46680700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 28115190 - 28115157
Alignment:
Q  17 ttctgtctagtacttgctgttttgcaaaccaaac 50  Q
    ||||||||||||||| ||||||||||||||||||    
T  28115190 ttctgtctagtacttactgttttgcaaaccaaac 28115157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 33177197 - 33177242
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||||||||| ||||||| | |||||||||||||| |||||    
T  33177197 ttatactgttctgtcaagtacttaccgttttgcaaaccaagcacac 33177242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 37931839 - 37931798
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacaca 53  Q
    ||||||| |||| ||||||| |||||||||||||||||||||    
T  37931839 tactgttatgtccagtacttactgttttgcaaaccaaacaca 37931798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 38520485 - 38520440
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||||||||| | |||| | |||||||||||||||||||||    
T  38520485 ttatactgttctgtccaatactagttgttttgcaaaccaaacacac 38520440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 50728048 - 50728088
Alignment:
Q  14 ctgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||| |||||||  |||||||||||||||||||||    
T  50728048 ctgttctgtccagtacttattgttttgcaaaccaaacacac 50728088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 50736062 - 50736102
Alignment:
Q  14 ctgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||| |||||||  |||||||||||||||||||||    
T  50736062 ctgttctgtccagtacttattgttttgcaaaccaaacacac 50736102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 2519 - 2561
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  2519 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 2561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 51354 - 51312
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  51354 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 51312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 4052412 - 4052370
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  4052412 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 4052370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 14005219 - 14005261
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  14005219 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 14005261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 32020191 - 32020233
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  32020191 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 32020233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 32303775 - 32303817
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  32303775 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 32303817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 955126 - 955168
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| |||||||||||||||| |||||||||||||    
T  955126 tactgttctgtcaagtacttgctgttttgtaaaccaaacacac 955168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 6386491 - 6386449
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| |||||||| |||||||||||||||||||||    
T  6386491 tactgttctgtccagtacttgttgttttgcaaaccaaacacac 6386449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 8673245 - 8673287
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  8673245 tactgttttgtccagtacttgctgttttgcaaaccaaacacac 8673287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 34063043 - 34063001
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  34063043 tactgttctgtccagtacttgcggttttgcaaaccaaacacac 34063001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 45446370 - 45446328
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  45446370 tactgttctgtccagtacttactgttttgcaaaccaaacacac 45446328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 31731982 - 31731937
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||||||    
T  31731982 ttatacttttctgtccagtacttactgttttgcaaaccaaacacac 31731937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 37664458 - 37664499
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacaca 53  Q
    |||||||||||| ||| |||||||||||||||||||||||||    
T  37664458 tactgttctgtccagtgcttgctgttttgcaaaccaaacaca 37664499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 13407125 - 13407168
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacaca 55  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||    
T  13407125 tactgttctgtccagtacttactgttttgtaaaccaaacacaca 13407168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 17805605 - 17805562
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacaca 55  Q
    ||||||| |||| ||||||| |||||||||||||||||||||||    
T  17805605 tactgttttgtcaagtacttactgttttgcaaaccaaacacaca 17805562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 41709689 - 41709650
Alignment:
Q  15 tgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  41709689 tgttctgtccagtacttactgttttgcaaaccaaacacac 41709650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 15001382 - 15001344
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaac 50  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  15001382 tactgttctgtccagtacttactgttttgcaaaccaaac 15001344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 27103874 - 27103832
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| |||||||| ||||||||||| |||||||||    
T  27103874 tactgttctgtccagtacttgttgttttgcaaatcaaacacac 27103832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 29563416 - 29563458
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||  | ||||||||||||||||||||||||||||    
T  29563416 tactgttctgttcaatacttgctgttttgcaaaccaaacacac 29563458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 34101426 - 34101376
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacacacaaa 59  Q
    |||||||||| |||| ||||||| || ||||||||||||||||||| ||||    
T  34101426 ttatactgttttgtccagtacttacttttttgcaaaccaaacacacccaaa 34101376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 37861811 - 37861769
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| |||||||||||| |||||||||    
T  37861811 tactgttctgtccagtacttactgttttgcaaatcaaacacac 37861769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 45113971 - 45113929
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||| |||| ||||||| ||||||||||||||||||||||    
T  45113971 tactgttatgtccagtacttactgttttgcaaaccaaacacac 45113929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 21272625 - 21272588
Alignment:
Q  15 tgttctgtctagtacttgctgttttgcaaaccaaacac 52  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  21272625 tgttctgtccaatacttgctgttttgcaaaccaaacac 21272588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 25478166 - 25478121
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||| |||| ||||||| ||||||| ||||||||||||||    
T  25478166 ttatactgttttgtcaagtacttactgttttacaaaccaaacacac 25478121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 35225578 - 35225537
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacaca 53  Q
    |||| ||||||| ||||||| |||||||||||||||||||||    
T  35225578 tactattctgtccagtacttactgttttgcaaaccaaacaca 35225537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 7395001 - 7395045
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacaca 53  Q
    ||||| ||||||||| ||||| | |||||||||||||||||||||    
T  7395001 ttatattgttctgtcaagtacctactgttttgcaaaccaaacaca 7395045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 17520510 - 17520470
Alignment:
Q  14 ctgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||| ||||||| |||||||||||||||| |||||    
T  17520510 ctgttctgtccagtacttactgttttgcaaaccaaccacac 17520470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 3922879 - 3922921
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  3922879 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 3922921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 32873945 - 32873987
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  32873945 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 32873987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 18470603 - 18470563
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacac 52  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  18470603 tactgttctgtccagtacttgctgttttgcaaaccaaacac 18470563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 30849422 - 30849465
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacaca 55  Q
    |||||||||||| ||||||| |||||||||||||||||||||||    
T  30849422 tactgttctgtcaagtacttactgttttgcaaaccaaacacaca 30849465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 10932733 - 10932775
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  10932733 tactgttctgtccagtacttactgttttgcaaaccaaacacac 10932775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 16963031 - 16962989
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  16963031 tactgttctgtccagtacttactgttttgcaaaccaaacacac 16962989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 36769745 - 36769787
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  36769745 tactgttctgtccagtacttactgttttgcaaaccaaacacac 36769787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 40753089 - 40753047
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  40753089 tactgttctgtccagtacttactgttttgcaaaccaaacacac 40753047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 3892199 - 3892244
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  3892199 ttatactgttctgtccagtacttactgttttgcaaaccaaatacac 3892244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 43158862 - 43158903
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacaca 53  Q
    ||||| ||| ||||||||||||||||||||||||||||||||    
T  43158862 tactgctctatctagtacttgctgttttgcaaaccaaacaca 43158903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 43189416 - 43189461
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||| |||| ||||||| ||||||||||||||||||||||    
T  43189416 ttatactgttatgtccagtacttactgttttgcaaaccaaacacac 43189461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 26994403 - 26994443
Alignment:
Q  14 ctgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  26994403 ctgttctgtccagtactttctgttttgcaaaccaaacacac 26994443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 41211377 - 41211417
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacac 52  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  41211377 tactgttttgtccagtacttgctgttttgcaaaccaaacac 41211417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 46408815 - 46408768
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacacacaaa 59  Q
    ||||||||| || | |||||||||||||||||||||||||||| ||||    
T  46408815 tactgttctatccaatacttgctgttttgcaaaccaaacacacccaaa 46408768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 329390 - 329352
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaac 50  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  329390 tactgttctgtccagtacttactgttttgcaaaccaaac 329352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 9913445 - 9913403
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||  |||| |||||||||||||||||||||||||    
T  9913445 tactgttctgtacagtatttgctgttttgcaaaccaaacacac 9913403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 9927133 - 9927091
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||  |||| |||||||||||||||||||||||||    
T  9927133 tactgttctgtacagtatttgctgttttgcaaaccaaacacac 9927091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 12982222 - 12982180
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||| || |||||||||| |||||||||||||||||||    
T  12982222 tactgttctctccagtacttgctcttttgcaaaccaaacacac 12982180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 30599184 - 30599226
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| |||||||| |||||||||||||    
T  30599184 tactgttctgtccagtacttactgttttgtaaaccaaacacac 30599226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 34117392 - 34117350
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||| |||| ||||||| ||||||||||||||||||||||    
T  34117392 tactgttatgtccagtacttactgttttgcaaaccaaacacac 34117350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 47316863 - 47316901
Alignment:
Q  16 gttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  47316863 gttctgtccagtacttactgttttgcaaaccaaacacac 47316901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 47947679 - 47947637
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| |||||||||||||||||| | |||||||||    
T  47947679 tactgttctgtccagtacttgctgttttgcagagcaaacacac 47947637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 47953109 - 47953067
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| |||||||||||||||||| | |||||||||    
T  47953109 tactgttctgtccagtacttgctgttttgcagagcaaacacac 47953067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 21784790 - 21784749
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacaca 53  Q
    ||||||| |||| ||||||| |||||||||||||||||||||    
T  21784790 tactgttttgtccagtacttactgttttgcaaaccaaacaca 21784749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 26910580 - 26910624
Alignment:
Q  10 tatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||| |||| |||| ||||||| ||||||||||||||||||||||    
T  26910580 tatattgttatgtccagtacttactgttttgcaaaccaaacacac 26910624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 47442771 - 47442731
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacac 52  Q
    ||||||| |||| | ||||||||||||||||||||||||||    
T  47442771 tactgttttgtccaatacttgctgttttgcaaaccaaacac 47442731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 15277151 - 15277193
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  15277151 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 15277193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 4494312 - 4494352
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacac 52  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  4494312 tactgttctgtctagtacttactgttttgcaaaccaaacac 4494352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 11279054 - 11279011
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacaca 55  Q
    ||||||||| || |||||||||||||||||||||||||||||||    
T  11279054 tactgttctatccagtacttgctgttttgcaaaccaaacacaca 11279011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 24203278 - 24203231
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacacacaaa 59  Q
    |||||||||||| | |||||||||||||||||||||||||||| ||||    
T  24203278 tactgttctgtccaatacttgctgttttgcaaaccaaacacactcaaa 24203231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 24242579 - 24242540
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaaca 51  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  24242579 tactgttctgtccagtacttgctgttttgcaaaccaaaca 24242540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 11613990 - 11614032
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| | ||||||||||||||||||||||||||||    
T  11613990 tactgttctgtccaatacttgctgttttgcaaaccaaacacac 11614032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 17867750 - 17867712
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaac 50  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  17867750 tactgttctgtccagtacttgctgttttgcaaaccaaac 17867712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 17877533 - 17877495
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaac 50  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  17877533 tactgttctgtccagtacttgctgttttgcaaaccaaac 17877495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 28502374 - 28502332
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  28502374 tactgttctgtccagtacttactgttttgcaaaccaaacacac 28502332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 29814780 - 29814738
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  29814780 tactgttctgtccagtacttactgttttgcaaaccaaacacac 29814738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 32805393 - 32805351
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  32805393 tactgttatgtccagtacttgctgttttgcaaaccaaacacac 32805351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 2614814 - 2614769
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||| |||| |||||||| |||||||||||||||||||||    
T  2614814 ttatactgttttgtccagtacttgttgttttgcaaaccaaacacac 2614769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 11212172 - 11212131
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacaca 53  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  11212172 tactgttctgtccaatacttgctgttttgcaaaccaaacaca 11212131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 3259593 - 3259551
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| | | ||||||||||||||||||||||||||    
T  3259593 tactgttctgtccaatccttgctgttttgcaaaccaaacacac 3259551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 10959916 - 10959874
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||| || ||||||| ||||||||||||||||||||||    
T  10959916 tactgttctatccagtacttactgttttgcaaaccaaacacac 10959874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 17443178 - 17443136
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| | || |||||||||||||||||||||||||    
T  17443178 tactgttctgtccaatatttgctgttttgcaaaccaaacacac 17443136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 32410063 - 32410108
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||||||||||| || |||||||||||| |||| ||||    
T  32410063 ttatactgttctgtctagtatttactgttttgcaaatcaaagacac 32410108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 2351595 - 2351553
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  2351595 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 2351553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 4818321 - 4818363
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  4818321 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 4818363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 35701192 - 35701150
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  35701192 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 35701150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 11963256 - 11963216
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacac 52  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  11963256 tactgttctgtccagtacttgctgttttgcaaaccaaacac 11963216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 29241308 - 29241261
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacacacaaa 59  Q
    |||||||||||| |||||||||||||||||||||||| ||||| ||||    
T  29241308 tactgttctgtccagtacttgctgttttgcaaaccaagcacacccaaa 29241261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 7208396 - 7208438
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| |||||||| |||||||||||||||||||||    
T  7208396 tactgttctgtccagtacttgttgttttgcaaaccaaacacac 7208438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 24181790 - 24181832
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  24181790 tactgttctgtccagtacttactgttttgcaaaccaaacacac 24181832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 21739334 - 21739379
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||| |||| |||| ||||||||||||||||||||||||||||||    
T  21739334 ttatattgttatgtccagtacttgctgttttgcaaaccaaacacac 21739379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 41790640 - 41790685
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||||    
T  41790640 ttatactgttctgtccagtacttactgttttgtaaaccaaacacac 41790685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 20119686 - 20119639
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacacacaaa 59  Q
    |||||||||||| | ||||| |||||||||||||||||||||| ||||    
T  20119686 tactgttctgtccaatacttactgttttgcaaaccaaacacacccaaa 20119639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 40182376 - 40182337
Alignment:
Q  15 tgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  40182376 tgttctgtccagtacttgctgttttggaaaccaaacacac 40182337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 548263 - 548221
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| |||||||  |||||||||||||||||||||    
T  548263 tactgttctgtccagtacttaatgttttgcaaaccaaacacac 548221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 7523086 - 7523044
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| | ||||| ||||||||||||||||||||||    
T  7523086 tactgttctgtccaatacttcctgttttgcaaaccaaacacac 7523044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 7725989 - 7726031
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||| |||||||||||| |||||||||||| |||||||||    
T  7725989 tactgttatgtctagtacttactgttttgcaaatcaaacacac 7726031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 31880242 - 31880284
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| |||||||||||| |||||||||    
T  31880242 tactgttctgtccagtacttactgttttgcaaatcaaacacac 31880284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 37148750 - 37148792
Alignment:
Q  8 attatactgttctgtctagtacttgctgttttgcaaaccaaac 50  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||    
T  37148750 attatactgttttgtccagtacttactgttttgcaaaccaaac 37148792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 5673059 - 5673018
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacaca 53  Q
    |||||||||||| ||||||| |||||||| ||||||||||||    
T  5673059 tactgttctgtcaagtacttactgttttgtaaaccaaacaca 5673018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 6284477 - 6284522
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||| ||||||||| |||||||||||||||| ||| |||||||||    
T  6284477 ttatattgttctgtccagtacttgctgttttgtaaatcaaacacac 6284522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 22432473 - 22432518
Alignment:
Q  14 ctgttctgtctagtacttgctgttttgcaaaccaaacacacacaaa 59  Q
    |||||||||||||||||| ||||||| |||||||||| ||| ||||    
T  22432473 ctgttctgtctagtacttactgttttacaaaccaaacgcacccaaa 22432518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 2134982 - 2134944
Alignment:
Q  16 gttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2134982 gttctgtctagtacttgctgttttgcaaaccaaacacac 2134944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 29584791 - 29584749
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  29584791 tactgttctgtccagtacttgctgttttgcaaaccaaacacac 29584749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 21221529 - 21221570
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacaca 53  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  21221529 tactgttctgtctagtacttgctgtattgcaaaccaaacaca 21221570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 34026598 - 34026551
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacacacaaa 59  Q
    |||||||||||| ||||||| |||||||||||||||||||||| ||||    
T  34026598 tactgttctgtccagtacttactgttttgcaaaccaaacacacccaaa 34026551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 47958604 - 47958643
Alignment:
Q  15 tgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  47958604 tgttctgtccagtacttgctgttttgcaaaccaaacacac 47958643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 5442207 - 5442165
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| |||||||||| |||||||||||||||||||    
T  5442207 tactgttctgtccagtacttgctattttgcaaaccaaacacac 5442165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 20254991 - 20254949
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  20254991 tactgttatgtccagtacttgctgttttgcaaaccaaacacac 20254949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 20609802 - 20609844
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  20609802 tactgttctgtccagtacttactgttttgcaaaccaaacacac 20609844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 26282556 - 26282598
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||| || ||||||||||||||||||||||||||||||    
T  26282556 tactgttctatccagtacttgctgttttgcaaaccaaacacac 26282598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 40083233 - 40083195
Alignment:
Q  16 gttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  40083233 gttctgtctagtacttgctgttttgcaagccaaacacac 40083195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 43175485 - 43175443
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  43175485 tactgttttgtccagtacttgctgttttgcaaaccaaacacac 43175443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 22484908 - 22484953
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||| |||| ||||||| ||||||||||||||||||||||    
T  22484908 ttatactgttatgtccagtacttactgttttgcaaaccaaacacac 22484953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 44116870 - 44116829
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacaca 53  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  44116870 tactgttctatccagtacttgctgttttgcaaaccaaacaca 44116829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 42636557 - 42636597
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacac 52  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  42636557 tactattctgtctagtacttgttgttttgcaaaccaaacac 42636597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 53557967 - 53558006
Alignment:
Q  15 tgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  53557967 tgttctgtcaagtacttactgttttgcaaaccaaacacac 53558006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 1344876 - 1344918
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||| |||| |||||||||| |||||||||||||||||||    
T  1344876 tactgttttgtccagtacttgctattttgcaaaccaaacacac 1344918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 4851625 - 4851667
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||| ||||  |||||||||||||||||||||||||||||    
T  4851625 tactgttttgtccggtacttgctgttttgcaaaccaaacacac 4851667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 28675706 - 28675664
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| |||||||  |||||||||||||||||||||    
T  28675706 tactgttctgtccagtacttattgttttgcaaaccaaacacac 28675664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 51259949 - 51259991
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||| || ||||||| ||||||||||||||||||||||    
T  51259949 tactgttctatccagtacttactgttttgcaaaccaaacacac 51259991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 3864843 - 3864883
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacac 52  Q
    |||||||||||  ||||||| ||||||||||||||||||||    
T  3864843 tactgttctgtgcagtacttactgttttgcaaaccaaacac 3864883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 101867 - 101822
Alignment:
Q  9 ttatactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  101867 ttatactgttctgtccggtacttgctgttttgcaaaccaaacacac 101822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 12717 - 12759
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||| || ||||||||||||||||||||||||||||||    
T  12717 tactgttctatccagtacttgctgttttgcaaaccaaacacac 12759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 18235 - 18277
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||||| || ||||||||||||||||||||||||||||||    
T  18235 tactgttctatccagtacttgctgttttgcaaaccaaacacac 18277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 23492 - 23450
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  23492 tactgttctgtccagtatttgctgttttgcaaaccaaacacac 23450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 338802 - 338760
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  338802 tactgttatgtccagtacttgctgttttgcaaaccaaacacac 338760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 373130 - 373171
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacaca 53  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  373130 tactgttctgttcagtacttgctgttttgcaaaccaaacaca 373171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 15543 - 15585
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacacac 54  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||    
T  15543 tactgttctgtccagtacttactgttttacaaaccaaacacac 15585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 13863 - 13905
Alignment:
Q  8 attatactgttctgtctagtacttgctgttttgcaaaccaaac 50  Q
    |||||||||||||||| ||||||| |||||||||||| |||||    
T  13863 attatactgttctgtccagtacttactgttttgcaaatcaaac 13905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 43129 - 43167
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaac 50  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  43129 tactgctctgtctagtacttactgttttgcaaaccaaac 43167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 5620 - 5658
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaac 50  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  5620 tactgttatgtccagtacttgctgttttgcaaaccaaac 5658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 15087 - 15047
Alignment:
Q  12 tactgttctgtctagtacttgctgttttgcaaaccaaacac 52  Q
    ||||||||||||  |||||| ||||||||||||||||||||    
T  15087 tactgttctgtccggtacttactgttttgcaaaccaaacac 15047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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