View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6176_low_6 (Length: 567)
Name: NF6176_low_6
Description: NF6176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6176_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 19 - 556
Target Start/End: Original strand, 13408456 - 13409000
Alignment:
| Q |
19 |
aatgaatggattcaaaggagtgattttcctttgatatcaagttttggaagtgcttcatcttcttcttcttatgcttcaagttcatggagtggtcaaaaaa |
118 |
Q |
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| T |
13408456 |
aatgaatggattcaaaggagtgattttcctttgatatcaagttttggaaatgcttcatcttcttcttcttatgcttcaagttcatggagtggtcaaaaaa |
13408555 |
T |
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| Q |
119 |
gagggcgtgatgaagaaagtagtggttctaatcagtatataactcaagctgttgttcctcctagactctttagaactgttatggtaccttctcaagaatc |
218 |
Q |
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| T |
13408556 |
gagggcgtgatgaagaaagtagtggttctaatcagtatataactcaagctgttgttcctcctagactctttagaactgttatggtaccttctcaagaatc |
13408655 |
T |
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| Q |
219 |
atcctcattatcatcaggtgcacttctatatcatactttttctt-actccatcgtctacgcctg------cagtatgttgtcatagttatacaaacggtt |
311 |
Q |
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| T |
13408656 |
atcctcattatcatcaggtgcacttctatatcatactttttcttaactccatcgtctacgcctgcagtatcagtatggtgtcatagttatacaaacggtt |
13408755 |
T |
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| Q |
312 |
ggattttatcgcttaaaatctaaccgttataacagctacaacaccatactacagtcgtagatgatttaacttattttttcattcatttcttgatcacaaa |
411 |
Q |
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| T |
13408756 |
gaattttatcgcttaaaatctaaccgttataacagctacaacaccatactgcagttgtagatgatttaacttattttttcattcatttcttgatcacaaa |
13408855 |
T |
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| Q |
412 |
acattattgtttgaatcatctacaactgcagtatggtgccacagttgtaagaacagttagattttatcgcttaaaatctaacgattattataactataac |
511 |
Q |
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| T |
13408856 |
acattattgtttgaatcatctacaactgcagtatggtgccacagttgtaagaacggttacattttatcgcttaaaatctaacggttattataactataac |
13408955 |
T |
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| Q |
512 |
accagattgctgcgggccagatgattcaacttatttttcattcat |
556 |
Q |
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| T |
13408956 |
accagacagctgcgggctagatgattcaagttatttttcattcat |
13409000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 279 - 424
Target Start/End: Original strand, 13408881 - 13409027
Alignment:
| Q |
279 |
ctgcagtatgttgtcatagttatacaaacggttggattttatcgcttaaaatctaaccgttataacagctacaacaccatactacagtcg--tagatgat |
376 |
Q |
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|||||||||| || || |||| || ||||||| |||||||||||||||||||||| ||||| | | ||| ||||||| || | | | |||||||| |
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| T |
13408881 |
ctgcagtatggtgccacagttgtaagaacggttacattttatcgcttaaaatctaacggttattataactataacaccagacagctgcgggctagatgat |
13408980 |
T |
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| Q |
377 |
ttaacttattttttcattcatttcttgatcacaaaacattattgtttg |
424 |
Q |
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| T |
13408981 |
tcaagttatttt-tcattcatttcttgatcacaaaacattattatttg |
13409027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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