View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6177_high_1 (Length: 978)
Name: NF6177_high_1
Description: NF6177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6177_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 636; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 238 - 969
Target Start/End: Original strand, 2747036 - 2747786
Alignment:
| Q |
238 |
acttacaatgacaggaatgaaagcaacccaaaagtatgtgtgccaacctgaaacaataaacataaatcttaattttgattgttggacaatgacataat-g |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2747036 |
acttacaatgacaggaatgaaagcaacccaaaagtatgtgtgccaacctgaaacaataaacataaatcttaattttgattgttggacaatgacataattg |
2747135 |
T |
|
| Q |
337 |
tgacttctattgttccaagtctttgtatcataccattgatattaagcaacaaaaatatgaccacaaagatccaaagataccaactgcaaccattaaaata |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2747136 |
tgacttctattgttccaagtctttgtatcataccattgatattaagcaacataaatatgaccacaaagatccaaagataccaactgcaaccattaaaata |
2747235 |
T |
|
| Q |
437 |
aaatggtgaattagtgacaagagagaatcaacaacaatacaatataagttgcacaaagaaaatttggcctacttattatattgcttatgattgatgaaga |
536 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2747236 |
aaatggtgagttagtgacaagagagaatcaacaacattacaatataagttgcacaaagaaaatttggcctacttattat--tgcttatgattgatgaaga |
2747333 |
T |
|
| Q |
537 |
ttttgatagttatagaaactttgcatatccacatacctaataccaacaacgttttggaagtcatcttcaagtgcacggatcatgtacttgtgaaaattaa |
636 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2747334 |
ttttgatagttatagaaactttgcatatccacatacctaataccaacaacgttttggaagtcatcttcaagtgcacggatcatgtacttgtgaaaattaa |
2747433 |
T |
|
| Q |
637 |
actttggatttcccctacaatgagtctaaaatagaaaaacaaaattaataatatggttcaatcatatatataattgcaaatacataacatacaaatctta |
736 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2747434 |
actttggatttcccctacaatgagtctaaaatagaaaaacaaaattaataatatggttcaatcatatatataattgcaaatacataacatacatatctta |
2747533 |
T |
|
| Q |
737 |
ccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaatatatatgaaaaattaca |
836 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2747534 |
ccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaatataaatgaaaaattaca |
2747633 |
T |
|
| Q |
837 |
aggcataatcaactac------aatagtcaaagacaatatggtaaaaccagaaaag--------------tataatcaacctaccacccatcccattata |
916 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2747634 |
aggcataatcaactacaatattaatagtcaaagacaatatggtaaaaccagaaaagtataatcaactacatataatcaacctaccacccatcccattata |
2747733 |
T |
|
| Q |
917 |
gcataatttttgccaaaaccagtaaaacgattctttataaaagcatgatgatg |
969 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
2747734 |
gcataatttttgccaaaaccagtaaaacgattctttataaaagaatgctgatg |
2747786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 365 - 816
Target Start/End: Original strand, 2755223 - 2755662
Alignment:
| Q |
365 |
cataccattgatattaagcaacaaaaatatgaccacaaagatccaaagataccaactgcaaccattaaaataaaatggtgaattagtgacaagagagaat |
464 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
2755223 |
cataccattgacattaagcaacaaaaatatgaccacaaagatccaaagataccaactgcaaccattaaaataaaatggtgaattaatgacaacaaagaat |
2755322 |
T |
|
| Q |
465 |
caacaacaatacaatataagttgcacaaagaaaatttggcctacttattatattgcttatgattgatgaagattttgatagttatagaaactttgcatat |
564 |
Q |
| |
|
| ||| |||| |||| | || ||||||||||||||||| | || ||| | ||||||||||| | || ||||||||||| | | |
|
|
| T |
2755323 |
acataactttacactataggctgaacaaagaaaatttggcc-----aataaatt-------actgatgaagattgtagtaaatatagaaacttgatagaa |
2755410 |
T |
|
| Q |
565 |
ccacatacctaataccaacaacgttttggaagtcatcttcaagtgcacggatcatgtacttgtgaaaattaaactttggatttcccctacaatgagtcta |
664 |
Q |
| |
|
| ||||||||||||| ||||| || | ||| ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2755411 |
gcgcatacctaataccgacaactttcttgaaatcatcttcaagcgcacggttcatgtacttgtgaaaattaaacttcggatttcccctacaatgagtcta |
2755510 |
T |
|
| Q |
665 |
aaatagaaaaacaaaattaataatatggttcaatcatatat-ataattgcaa-atacataacatacaaatcttaccataatgaaaccacgccttaatgtc |
762 |
Q |
| |
|
||| | | ||||| ||||||||||||| ||||||||||||| ||||| |||| ||| ||| |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
2755511 |
aaaca-ataaacagaattaataatatgattcaatcatatataataatggcaagata-tgcacactaaaatcttaccttaatgaaaccaagccttaatgtc |
2755608 |
T |
|
| Q |
763 |
acataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctga |
816 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2755609 |
acatagtccaactttgtcacagatccataaaattgcttgaaaaatgatttctga |
2755662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 2754835 - 2754946
Alignment:
| Q |
238 |
acttacaatgacaggaatgaaagcaacccaaaagtatgtgtgccaacctgaaacaataaacataaatcttaattttgattgttggacaatgacataat-g |
336 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||||||| || |||| |||||||||||||||||| || ||| |||||| | |
|
|
| T |
2754835 |
acttacaatgacaggaatgaaagcaatccaaaaatatgtgtgccaacctgaaaccatgaacagaaatcttaattttgattg---gaaaattgcataattg |
2754931 |
T |
|
| Q |
337 |
tgacttctattgttc |
351 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2754932 |
tgacttctattgttc |
2754946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 2746934 - 2747017
Alignment:
| Q |
107 |
aaaatttacatttatatgcatgcacata--ttagactagttcaggtcgttcgataaagatctatgacctattctatttaaagca |
188 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | |||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2746934 |
aaaatttacatttatatgcatgcacatagattataatagttcaggtggttcgacaaagatctatgacctattctatttaaagca |
2747017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 887 - 969
Target Start/End: Original strand, 2755748 - 2755830
Alignment:
| Q |
887 |
tataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgatgatg |
969 |
Q |
| |
|
|||||| ||||||||| ||| |||||||| ||| ||| ||||||||||||||||||| ||| ||| |||||||| || ||||| |
|
|
| T |
2755748 |
tataattaacctaccaaccaccccattatggcagaatctttgccaaaaccagtaaaatgatccttgataaaagcgtgttgatg |
2755830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 7e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 627 - 834
Target Start/End: Original strand, 2372741 - 2372946
Alignment:
| Q |
627 |
tgaaaattaaactttggatttcccctacaatgagtctaaaatagaaaaacaaaattaataatatggttcaatcatatatataattgcaaatacata-aca |
725 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| ||||| || || |||||||||||| |||||| ||| ||| |||| || | || ||| |
|
|
| T |
2372741 |
tgaaaattaaactttgaat---ccctacaatgagtctaatatagagaatcatcattaataatatgattcaataatagataatattggcaagatatgcaca |
2372837 |
T |
|
| Q |
726 |
tacaaatcttaccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaatatatat |
825 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| || ||| ||||||||||||| |||||||||||||||||||||| | |||||||||||| | || |
|
|
| T |
2372838 |
ctaaaatcttaccttaatgaaaccaagccttaatgccatatagtccaactttgtcatagatccataaaattgcttgaaaatttatttctgaaataaaaat |
2372937 |
T |
|
| Q |
826 |
gaaaaatta |
834 |
Q |
| |
|
| ||||||| |
|
|
| T |
2372938 |
gcaaaatta |
2372946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 887 - 969
Target Start/End: Original strand, 2372998 - 2373080
Alignment:
| Q |
887 |
tataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgatgatg |
969 |
Q |
| |
|
|||||| ||||||||| || |||||||||||| ||| |||||||||||||||||| ||| ||| ||||||||||| ||||| |
|
|
| T |
2372998 |
tataattaacctaccaagcaccccattatagcagaatcattgccaaaaccagtaaaatgatccttgataaaagcatgttgatg |
2373080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 6e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 365 - 436
Target Start/End: Complemental strand, 55322556 - 55322485
Alignment:
| Q |
365 |
cataccattgatattaagcaacaaaaatatgaccacaaagatccaaagataccaactgcaaccattaaaata |
436 |
Q |
| |
|
||||||||||||||| | |||||| || ||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
55322556 |
cataccattgatatttaacaacaagaagatgaccacaaagagccaaagataccaactgcaaccatgaaaata |
55322485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 238 - 311
Target Start/End: Original strand, 27383556 - 27383629
Alignment:
| Q |
238 |
acttacaatgacaggaatgaaagcaacccaaaagtatgtgtgccaacctgaaacaataaacataaatcttaatt |
311 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| |||||||||||| ||| ||||||| ||| | ||||||||| |
|
|
| T |
27383556 |
acttacaatgacatgaatgaaagcaaaccaaaaatatgtgtgccaatctggaacaatacacaaacatcttaatt |
27383629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 733 - 818
Target Start/End: Complemental strand, 55322128 - 55322043
Alignment:
| Q |
733 |
cttaccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaa |
818 |
Q |
| |
|
|||||| ||||||||||| | |||||||| |||||||| | |||||||| || |||||||||||||||||||| |||| |||||| |
|
|
| T |
55322128 |
cttaccgtaatgaaaccaagtcttaatgtgacataatctgattttgtcacagagccataaaattgcttgaaaaaggattgctgaaa |
55322043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 597 - 643
Target Start/End: Complemental strand, 55322305 - 55322259
Alignment:
| Q |
597 |
tcatcttcaagtgcacggatcatgtacttgtgaaaattaaactttgg |
643 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
55322305 |
tcatcttcaagggcacgaatcatgtacttgtgaaaattaaactttgg |
55322259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 1094745 - 1094688
Alignment:
| Q |
238 |
acttacaatgacaggaatgaaagcaacccaaaagtatgtgtgccaacctgaaacaata |
295 |
Q |
| |
|
||||||||||||| ||||||| |||| |||||| |||| ||||||| ||| ||||||| |
|
|
| T |
1094745 |
acttacaatgacatgaatgaatgcaaaccaaaaatatgcgtgccaatctggaacaata |
1094688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University