View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6177_high_15 (Length: 231)

Name: NF6177_high_15
Description: NF6177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6177_high_15
NF6177_high_15
[»] chr5 (14 HSPs)
chr5 (1-221)||(10218144-10218364)
chr5 (3-163)||(10664558-10664718)
chr5 (14-212)||(10603353-10603551)
chr5 (11-159)||(10610363-10610511)
chr5 (11-212)||(10599688-10599889)
chr5 (3-134)||(7191683-7191814)
chr5 (17-135)||(10549470-10549588)
chr5 (12-132)||(10557600-10557720)
chr5 (3-143)||(10653599-10653739)
chr5 (11-163)||(10748423-10748575)
chr5 (89-165)||(10764618-10764694)
chr5 (3-141)||(10661485-10661623)
chr5 (14-220)||(10563619-10563825)
chr5 (70-217)||(9837795-9837942)
[»] chr6 (5 HSPs)
chr6 (3-162)||(12905840-12905999)
chr6 (4-162)||(12930929-12931087)
chr6 (1-59)||(12956834-12956892)
chr6 (4-39)||(12947417-12947452)
chr6 (89-162)||(12947294-12947367)
[»] chr2 (1 HSPs)
chr2 (3-162)||(17924803-17924962)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10218144 - 10218364
Alignment:
Q  1 aataagttcagtggataaattgcctatgaaatttggcaatttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatttgtcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218144 aataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatttgtcaaa 10218243  T
Q  101 gattttaaaaactccaaatcctttgttgaattgtctcctaaatagttgtattccaaacttagcaatagtagatcttttagccatcctagagttggaactt 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10218244 gattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaacttagcaatagtagatcatttagccatcctagagttggaactt 10218343  T
Q  201 gtccaacaaaatagttttgac 221  Q
    |||||||||||||||||||||    
T  10218344 gtccaacaaaatagttttgac 10218364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 10664558 - 10664718
Alignment:
Q  3 taagttcagtggataaattgcctatgaaatttggcaatttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatttgtcaaaga 102  Q
    |||||| | ||||||||||||||| |||||||| ||||||| |||||||||| ||||||  |||||||| |||||| |   || ||||||| ||||| ||    
T  10664558 taagttgattggataaattgcctacgaaatttgtcaatttggctccaaaattattattgcatatagaaatcacttgtagtctactacaattcgtcaagga 10664657  T
Q  103 ttttaaaaactccaaatcctttgttgaattgtctcctaaatagttgtattccaaacttagc 163  Q
     ||||| |||||||||||||| ||||| ||||| ||||||  |||| |||||| |||||||    
T  10664658 ctttaagaactccaaatccttagttgagttgtcacctaaactgttgaattccagacttagc 10664718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 10603551 - 10603353
Alignment:
Q  14 gataaattgcctatgaaatttggcaatttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatttgtcaaagattttaaaaact 113  Q
    |||||||| |||||  ||||| ||||  | ||||||||||| |||||| ||| ||| ||   |||||||||| |||| |||||||| |||||||||||||    
T  10603551 gataaatttcctatagaattttgcaaactacctccaaaattattattggttaaagatagtgattgcaacttactacagtttgtcaatgattttaaaaact 10603452  T
Q  114 ccaaatcctttgttgaattgtctcctaaatagttgtattccaaacttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaaat 212  Q
    |||||||  ||||||| ||||| ||||||  |||   ||||||| |||||||    ||||||||||||   |||||| |||||||||||||||||||||    
T  10603451 ccaaatcaattgttgagttgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagacttggaacttgtccaacaaaat 10603353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 10610511 - 10610363
Alignment:
Q  11 gtggataaattgcctatgaaatttggcaatttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatttgtcaaagattttaaaa 110  Q
    |||||||||||||| ||||||||||||||  | |||||||| || |||||   ||||||||||  ||  |  ||| |||| ||||||||| |||||||||    
T  10610511 gtggataaattgccaatgaaatttggcaaactacctccaaacttattattagatatagaaagcttttctagtttactacagtttgtcaaatattttaaaa 10610412  T
Q  111 actccaaatcctttgttgaattgtctcctaaatagttgtattccaaact 159  Q
    |||| |||||  | ||||||||||  || ||||||||||||||||||||    
T  10610411 actctaaatctatagttgaattgttaccgaaatagttgtattccaaact 10610363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 10599889 - 10599688
Alignment:
Q  11 gtggataaattgcctatgaaatttggcaatttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatttgtcaaagattttaaaa 110  Q
    ||||||||||| || ||  ||||| ||||  | ||||||||||| |||| | ||| ||| |||  |||||||||| |||| |||||||| || || ||||    
T  10599889 gtggataaatttccaatagaattttgcaaactacctccaaaattattataggttaaagatagcgattgcaacttactacagtttgtcaatgacttcaaaa 10599790  T
Q  111 actccaaatcctttgttgaattgtctcctaaatagttgtattccaaacttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaa 210  Q
    ||| ||||||| |||||||  |||| ||||||  |||   ||||||| |||||||    ||||||||||||   |||||| |||||||||||||||||||    
T  10599789 actgcaaatccattgttgagctgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagacttggaacttgtccaacaaa 10599690  T
Q  211 at 212  Q
    ||    
T  10599689 at 10599688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 7191814 - 7191683
Alignment:
Q  3 taagttcagtggataaattgcctatgaaatttggcaatttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatttgtcaaaga 102  Q
    |||||| |||||||||||| || ||| |||||||||| || ||||||||||| |||  |  |||||||| |||| | |  ||| |||| |||||||| ||    
T  7191814 taagttgagtggataaattcccaatggaatttggcaaattacctccaaaattattaaaggatatagaaaacactagtagtttactacagtttgtcaagga 7191715  T
Q  103 ttttaaaaactccaaatcctttgttgaattgt 134  Q
    |||||||||||| |||||||| || |||||||    
T  7191714 ttttaaaaactctaaatccttagtggaattgt 7191683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 10549588 - 10549470
Alignment:
Q  17 aaattgcctatgaaatttggcaatttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatttgtcaaagattttaaaaactcca 116  Q
    ||||| ||||||||| |||||||  | ||||||||||| |||| |  ||||||||   ||||||| ||| ||||||||||||| | ||||||||| || |    
T  10549588 aaattacctatgaaacttggcaaactacctccaaaattattatgggatatagaaaatgcttgcaaattactacaatttgtcaatggttttaaaaattcta 10549489  T
Q  117 aatcctttgttgaattgtc 135  Q
    ||||||| |||||||||||    
T  10549488 aatccttagttgaattgtc 10549470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 10557720 - 10557600
Alignment:
Q  12 tggataaattgcctatgaaatttggcaatttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatttgtcaaagattttaaaaa 111  Q
    ||||||||||||||   |||||||||||  | ||||||||||| |||| |  |||||||  ||||||||||||| |||| || ||||| |||||||||||    
T  10557720 tggataaattgcctgccaaatttggcaaactacctccaaaattattatgggatatagaacacacttgcaacttactacagttagtcaatgattttaaaaa 10557621  T
Q  112 ctccaaatcctttgttgaatt 132  Q
       ||||||||| ||||||||    
T  10557620 aatcaaatccttagttgaatt 10557600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 10653599 - 10653739
Alignment:
Q  3 taagttcagtggataaattgcctatgaaatttggcaatttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatttgtcaaaga 102  Q
    |||||| |||||||||||||||||  ||||||||||| || ||||||||||| ||||    |||||||| |||    |  ||| |||| |||||||| |     
T  10653599 taagttgagtggataaattgcctacaaaatttggcaagttacctccaaaattattataagctatagaaatcacggttagtttactacagtttgtcaaggt 10653698  T
Q  103 ttttaaaaactccaaatcctttgttgaattgtctcctaaat 143  Q
    ||||||||| || |||||||| |||| ||||||||||||||    
T  10653699 ttttaaaaattctaaatccttagttgtattgtctcctaaat 10653739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 10748423 - 10748575
Alignment:
Q  11 gtggataaattgcctatgaaatttggcaatttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatttgtcaaagattttaaaa 110  Q
    ||||||||| |||| ||| ||||||||||  | |||||||| || |||||   |||||||| |||||  |  ||| |||||||||||||| | |||||||    
T  10748423 gtggataaactgccaatggaatttggcaaactacctccaaacttattattacatatagaaaccacttctagtttactacaatttgtcaaatactttaaaa 10748522  T
Q  111 actccaaatcctttgttgaattgtctcctaaatagttgtattccaaacttagc 163  Q
    |||| |||||  | ||||||||||  || |||||||||| ||||||| |||||    
T  10748523 actctaaatcgatagttgaattgttaccgaaatagttgtcttccaaatttagc 10748575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 10764618 - 10764694
Alignment:
Q  89 caatttgtcaaagattttaaaaactccaaatcctttgttgaattgtctcctaaatagttgtattccaaacttagcaa 165  Q
    |||||||||||| ||||||||||||| |||||| |||| |||||||| ||||||| ||| | ||||||| |||||||    
T  10764618 caatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaa 10764694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 10661485 - 10661623
Alignment:
Q  3 taagttcagtggataaattgcctatgaaatttggcaatttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatttgtcaaaga 102  Q
    |||||| |||||||||||||||||  ||||||||||| || || |||||||  ||| ||  |||||||| ||||   |  |||||  | |||||||| |     
T  10661485 taagttgagtggataaattgcctacaaaatttggcaagttacccccaaaatgattactggatatagaaatcactcttagtttagtgaagtttgtcaaggt 10661584  T
Q  103 ttttaaaaactccaaatcctttgttgaattgtctcctaa 141  Q
    ||| ||||||||||||||||| ||||||||||| |||||    
T  10661585 tttcaaaaactccaaatccttagttgaattgtcacctaa 10661623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 10563825 - 10563619
Alignment:
Q  14 gataaattgcctatgaaatttggcaatttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatttgtcaaagattttaaaaact 113  Q
    ||||||||||| |||||||||||||| |  ||||||||||| |||     ||| ||||||| ||  |  ||| |||||||||||||| | ||||||||||    
T  10563825 gataaattgccaatgaaatttggcaaatgacctccaaaattattagaagctatcgaaagcatttctagtttactacaatttgtcaaatagtttaaaaact 10563726  T
Q  114 ccaaatcctttgttgaattgtctcctaaatagttgtattccaaacttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaaata 213  Q
    | |||||  |  |||||||||  ||||||| ||||||| | ||||||||| |    ||||||| || |    ||||| ||||||||||||| || |||||    
T  10563725 ctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagtaaagatcttgtaacttctctagacttggaacttgtcccaccaaata 10563626  T
Q  214 gttttga 220  Q
    |||||||    
T  10563625 gttttga 10563619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 217
Target Start/End: Original strand, 9837795 - 9837942
Alignment:
Q  70 aagcacttgcaacttagtacaatttgtcaaagattttaaaaactccaaatcctttgttgaattgtctcctaaatagttgtattccaaacttagcaatagt 169  Q
    ||||||||| || ||| |||||||||||| || ||| |||||| | |||||||| ||||||||||| |||| |  |||   ||| | | |||||||        
T  9837795 aagcacttgtaagttactacaatttgtcatagttttcaaaaaccctaaatccttagttgaattgtcacctagaatgttcatttcaagatttagcaaatta 9837894  T
Q  170 agatcttttagccatcctagagttggaacttgtccaacaaaatagttt 217  Q
    ||||||| ||||   |||||| ||||||||||||||||||||| ||||    
T  9837895 agatcttgtagcttccctagacttggaacttgtccaacaaaatggttt 9837942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 12905999 - 12905840
Alignment:
Q  3 taagttcagtggataaattgcctatgaaatttggcaatttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatttgtcaaaga 102  Q
    ||||||||||||| || ||||||||| |||||||||| |  ||||||||||| |||   | ||| |||||||| |  |  ||| | |||||||||||| |    
T  12905999 taagttcagtggaaaagttgcctatggaatttggcaaatgtcctccaaaattattagaatctattgaaagcacgtatagtttactgcaatttgtcaaata 12905900  T
Q  103 ttttaaaaactccaaatcctttgttgaattgtctcctaaatagttgtattccaaacttag 162  Q
    |||||||||||| |||||||| |||||| |||  ||||||| |||| || ||||||||||    
T  12905899 ttttaaaaactctaaatccttagttgaaatgttacctaaattgttgaatcccaaacttag 12905840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 12931087 - 12930929
Alignment:
Q  4 aagttcagtggataaattgcctatgaaatttggcaatttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatttgtcaaagat 103  Q
    ||||||||| ||||||||||||||| |||||||||| |  ||||||||||| ||||    ||| |||||||| |  |  ||| | |||||||||||| ||    
T  12931087 aagttcagtcgataaattgcctatggaatttggcaaatgacctccaaaattattataagatatcgaaagcacgtatagtttactgcaatttgtcaaatat 12930988  T
Q  104 tttaaaaactccaaatcctttgttgaattgtctcctaaatagttgtattccaaacttag 162  Q
    ||||||||||| |||||| | ||||||||||  ||||||| |||   ||||||||||||    
T  12930987 tttaaaaactctaaatccatagttgaattgttacctaaattgttaacttccaaacttag 12930929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 12956892 - 12956834
Alignment:
Q  1 aataagttcagtggataaattgcctatgaaatttggcaatttgcctccaaaattgttat 59  Q
    ||||||||||||||||||||| |||||| |||||||||| | |||||||||||| ||||    
T  12956892 aataagttcagtggataaattccctatggaatttggcaaatggcctccaaaattattat 12956834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 12947452 - 12947417
Alignment:
Q  4 aagttcagtggataaattgcctatgaaatttggcaa 39  Q
    ||||||||||||||||||||||||| ||||||||||    
T  12947452 aagttcagtggataaattgcctatggaatttggcaa 12947417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 12947367 - 12947294
Alignment:
Q  89 caatttgtcaaagattttaaaaactccaaatcctttgttgaattgtctcctaaatagttgtattccaaacttag 162  Q
    |||||||||||| ||||||||||||| || ||| | |||||| |||  ||||||| |||  |||||||||||||    
T  12947367 caatttgtcaaatattttaaaaactctaagtccatagttgaaatgttacctaaattgttaaattccaaacttag 12947294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 162
Target Start/End: Original strand, 17924803 - 17924962
Alignment:
Q  3 taagttcagtggataaattgcctatgaaatttggcaatttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatttgtcaaaga 102  Q
    ||||||||||||||||||| |||||| |||||||||| |  ||||||||||| ||||    ||| |||| |   || |  ||| | |||||||||||| |    
T  17924803 taagttcagtggataaattccctatggaatttggcaaatgacctccaaaattattataagatatcgaaaacttgtgtagtttactgcaatttgtcaaata 17924902  T
Q  103 ttttaaaaactccaaatcctttgttgaattgtctcctaaatagttgtattccaaacttag 162  Q
    |||||||||||| |||||| | |||||||| || ||||||| ||| | ||||||| ||||    
T  17924903 ttttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttag 17924962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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