View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6177_low_10 (Length: 246)
Name: NF6177_low_10
Description: NF6177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6177_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 10981943 - 10982180
Alignment:
| Q |
1 |
tcttcaaattccagggttaccaaagagtctttcaacagatgattaccctgacggattcaatgattctatttctgagaataaagtgttacaagatatgctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10981943 |
tcttcaaattccagggttaccaaagagtctttcaacagatgattaccctgacggattcaatgattctatttctgagaataaagtgttacaagatatgctt |
10982042 |
T |
|
| Q |
101 |
gattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaaggattattta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10982043 |
gattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagctttgaatgaaggattattta |
10982142 |
T |
|
| Q |
201 |
ttcctaatggtattccatccattttctgtactggacct |
238 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10982143 |
ttcctgatggtattccatccattttctgtactggacct |
10982180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 110 - 237
Target Start/End: Original strand, 10968099 - 10968229
Alignment:
| Q |
110 |
aaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaaggattatttattcctaatg |
209 |
Q |
| |
|
||||||| |||| ||||||||||| |||| |||||||||||||||| |||||| |||| ||| | |||||| |||||||||||||||| ||||||| ||| |
|
|
| T |
10968099 |
aaaactatgaggcaatgtgatggggttattgtgaacacttttgatgctattgagggaaaagctaataaagctttgaatgaaggattatatattcctgatg |
10968198 |
T |
|
| Q |
210 |
g---tattccatccattttctgtactggacc |
237 |
Q |
| |
|
| || |||||||||||| |||| |||||| |
|
|
| T |
10968199 |
gaactactccatccattttttgtattggacc |
10968229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 11002265 - 11002361
Alignment:
| Q |
96 |
tgcttgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaagg |
192 |
Q |
| |
|
|||||||||| |||||| | ||||||||||| ||||||||| |||||||||||||||| |||||||| || ||| ||||||| ||||||||||| |
|
|
| T |
11002265 |
tgcttgattcggcgaaaacaatgagggaatgtgctgggattattgtgaacacttttgatgctattgaagaaaaagctattaaaggtttgaatgaagg |
11002361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 10968020 - 10968070
Alignment:
| Q |
1 |
tcttcaaattccagggttaccaaagagtctttcaacagatgattaccctga |
51 |
Q |
| |
|
||||| |||||| ||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
10968020 |
tcttcgaattcctgggttaccaaaaaatatttcaacagatgattaccctga |
10968070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University