View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6177_low_11 (Length: 242)

Name: NF6177_low_11
Description: NF6177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6177_low_11
NF6177_low_11
[»] chr5 (9 HSPs)
chr5 (1-236)||(10217782-10218017)
chr5 (1-235)||(10748052-10748286)
chr5 (36-235)||(10610683-10610882)
chr5 (35-235)||(10717935-10718135)
chr5 (36-226)||(10764178-10764368)
chr5 (1-162)||(10741809-10741970)
chr5 (35-162)||(10563999-10564126)
chr5 (107-235)||(7192049-7192177)
chr5 (119-239)||(19606898-19607018)
[»] chr6 (5 HSPs)
chr6 (36-236)||(12931252-12931452)
chr6 (36-236)||(12898543-12898743)
chr6 (36-232)||(12957054-12957250)
chr6 (1-236)||(12906128-12906363)
chr6 (36-203)||(12947617-12947784)
[»] chr2 (1 HSPs)
chr2 (36-236)||(17924439-17924639)
[»] chr3 (1 HSPs)
chr3 (118-153)||(31468281-31468316)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 10218017 - 10217782
Alignment:
Q  1 aagttccaaaagatgcaagatttaacattgaatagaaacaagttgtcaggagatataccacactttataggcaatttcagccaattgtattggctggatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218017 aagttccaaaagatgcaagatttaacattgaatagaaacaagttgttaggagatataccacactttataggcaatttcagccaattgtattggctggatt 10217918  T
Q  101 tacatcataatatgtttgaaggaaatattcctccaagcataggaaactgccaacatttacaatatctaaatcttgctcaaaataagcttagaggaatcat 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  10217917 tacatcataatatgtttgaaggaagtattcctccaagcataggaaactgccaacatctacaatatctaaatctagctcaaaataagcttagaggaatcat 10217818  T
Q  201 acccttagagatttttaatcttttttccttatcaat 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  10217817 acccttagagatttttaatcttttttccttatcaat 10217782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 10748286 - 10748052
Alignment:
Q  1 aagttccaaaagatgcaagatttaacattgaatagaaacaagttgtcaggagatataccacactttataggcaatttcagccaattgtattggctggatt 100  Q
    |||||||||||||||||| ||||| | |||| | ||||||||||||||||| ||||||||| ||| ||||||||| |||| ||||||| |    ||||||    
T  10748286 aagttccaaaagatgcaatatttagctttgagtggaaacaagttgtcaggatatataccacccttcataggcaatctcagtcaattgtttaaattggatt 10748187  T
Q  101 tacatcataatatgtttgaaggaaatattcctccaagcataggaaactgccaacatttacaatatctaaatcttgctcaaaataagcttagaggaatcat 200  Q
    || ||| |||||||||  |||||||||||||||||||||||| ||| || ||| | |||||||| ||| ||||| |||| ||||||||||| |||| |||    
T  10748186 tatatcgtaatatgttccaaggaaatattcctccaagcatagaaaattgtcaaaagttacaatacctagatctttctcataataagcttagtggaaccat 10748087  T
Q  201 acccttagagatttttaatcttttttccttatcaa 235  Q
    ||| | |||||||||| || ||||||| |||||||    
T  10748086 accttcagagatttttcatattttttctttatcaa 10748052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 10610683 - 10610882
Alignment:
Q  36 aaacaagttgtcaggagatataccacactttataggcaatttcagccaattgtattggctggatttacatcataatatgtttgaaggaaatattcctcca 135  Q
    |||||||||||||||| ||||||||| ||| ||||||||| |||| ||||||| | || ||| | ||||   ||| |||||| |||||||||||||||||    
T  10610683 aaacaagttgtcaggatatataccacccttcataggcaatctcagtcaattgtttaggttggctgtacacagtaacatgtttcaaggaaatattcctcca 10610782  T
Q  136 agcataggaaactgccaacatttacaatatctaaatcttgctcaaaataagcttagaggaatcatacccttagagatttttaatcttttttccttatcaa 235  Q
    ||||||||||| || ||| | |||||||| ||| ||||| |||| ||||| ||||| |||  |||||| ||||||||||||||||||||||  |||||||    
T  10610783 agcataggaaattgtcaaaagttacaatacctagatctttctcataataaacttagtggatccatacctttagagatttttaatcttttttatttatcaa 10610882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 235
Target Start/End: Complemental strand, 10718135 - 10717935
Alignment:
Q  35 gaaacaagttgtcaggagatataccacactttataggcaatttcagccaattgtattggctggatttacatcataatatgtttgaaggaaatattcctcc 134  Q
    |||||||||||||||||||||| |||| ||||||||| ||| |||| ||||||| |    |    ||| | | |||||||||| |||| |||||||||||    
T  10718135 gaaacaagttgtcaggagatatgccaccctttataggaaatctcagtcaattgtttgatttacgattagaacttaatatgtttcaagggaatattcctcc 10718036  T
Q  135 aagcataggaaactgccaacatttacaatatctaaatcttgctcaaaataagcttagaggaatcatacccttagagatttttaatcttttttccttatca 234  Q
    ||| ||||||||||| ||| |||||||||||||| ||||| |||| |||| | |||| |||| ||||||  ||||| |||||||||||||||  ||||||    
T  10718035 aagtataggaaactgtcaaaatttacaatatctagatctttctcataataggtttagtggaaccatacctgtagaggtttttaatcttttttatttatca 10717936  T
Q  235 a 235  Q
    |    
T  10717935 a 10717935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 10764368 - 10764178
Alignment:
Q  36 aaacaagttgtcaggagatataccacactttataggcaatttcagccaattgtattggctggatttacatcataatatgtttgaaggaaatattcctcca 135  Q
    |||||||||||||||| ||||||||| ||| ||||||||| |||| ||||||| |    ||| ||||  |  |||||||||| | ||||||||||||||     
T  10764368 aaacaagttgtcaggatatataccacccttcataggcaatctcagtcaattgtttacattggctttaactggtaatatgtttcacggaaatattcctcct 10764269  T
Q  136 agcataggaaactgccaacatttacaatatctaaatcttgctcaaaataagcttagaggaatcatacccttagagatttttaatctttttt 226  Q
    |||||||||||||| ||| | |||||||||||  ||||| || | || |||||||| |||| ||||||  ||||| ||||| || ||||||    
T  10764268 agcataggaaactgtcaaaagttacaatatctcgatctttctgataacaagcttagcggaaccatacctgtagaggtttttcatatttttt 10764178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 10741970 - 10741809
Alignment:
Q  1 aagttccaaaagatgcaagatttaacattgaatagaaacaagttgtcaggagatataccacactttataggcaatttcagccaattgtattggctggatt 100  Q
    ||||||||||||||||| |  ||||  |||| | ||||||||||||||||||||||||||| ||||||||| ||| | || ||||||| |    |||| |    
T  10741970 aagttccaaaagatgcaggtgttaattttgagtggaaacaagttgtcaggagatataccaccctttataggaaatcttagtcaattgtttgatttggaat 10741871  T
Q  101 tacatcataatatgtttgaaggaaatattcctccaagcataggaaactgccaacatttacaa 162  Q
    || ||  |||||||||| |||| ||||||||||| | ||||||||| || ||| ||||||||    
T  10741870 taaattttaatatgtttcaagggaatattcctcctaccataggaaattgtcaaaatttacaa 10741809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 10563999 - 10564126
Alignment:
Q  35 gaaacaagttgtcaggagatataccacactttataggcaatttcagccaattgtattggctggatttacatcataatatgtttgaaggaaatattcctcc 134  Q
    |||||||||||||||| ||||| ||||  |||||||| ||| |||| || ||||||    | || |||  ||||||||||||||||||||||||||||||    
T  10563999 gaaacaagttgtcaggtgatatgccaccttttataggtaatctcagtcagttgtatgatttagaattagctcataatatgtttgaaggaaatattcctcc 10564098  T
Q  135 aagcataggaaactgccaacatttacaa 162  Q
     ||||||||||| || ||| ||||||||    
T  10564099 tagcataggaaattgtcaaaatttacaa 10564126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 235
Target Start/End: Original strand, 7192049 - 7192177
Alignment:
Q  107 ataatatgtttgaaggaaatattcctccaagcataggaaactgccaacatttacaatatctaaatcttgctcaaaataagcttagaggaatcataccctt 206  Q
    |||||||||| ||||||||||||||  |||| |||||||||||| || | |||||||| ||  | ||||| ||||| || |||||||||| |||||||||    
T  7192049 ataatatgttagaaggaaatattccgtcaagtataggaaactgcaaaaagttacaatacctggaccttgcacaaaacaatcttagaggaaccataccctt 7192148  T
Q  207 agagatttttaatcttttttccttatcaa 235  Q
    |||  |||| | ||||| ||| |||||||    
T  7192149 agaagttttcagtctttcttcgttatcaa 7192177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 19607018 - 19606898
Alignment:
Q  119 aaggaaatattcctccaagcataggaaactgccaacatttacaatatctaaatcttgctcaaaataagcttagaggaatcatacccttagagatttttaa 218  Q
    |||||||||||||| |||||||||||||||| ||| | |||||||   ||   |||  ||||||||| ||||| |||| ||||||||||||| |||||      
T  19607018 aaggaaatattccttcaagcataggaaactgtcaaaagttacaatccatagtcctttttcaaaataatcttagtggaaccatacccttagaggtttttcg 19606919  T
Q  219 tcttttttccttatcaatatt 239  Q
    |||||  || |||||||||||    
T  19606918 tctttcctctttatcaatatt 19606898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 36 - 236
Target Start/End: Original strand, 12931252 - 12931452
Alignment:
Q  36 aaacaagttgtcaggagatataccacactttataggcaatttcagccaattgtattggctggatttacatcataatatgtttgaaggaaatattcctcca 135  Q
    ||||||||||||||||| ||| |||| ||| ||||||||| |||| ||||||||||   | || ||| |||||||||||||| |||||| ||||||||||    
T  12931252 aaacaagttgtcaggaggtattccacccttcataggcaatctcagtcaattgtattatttagaattaaatcataatatgtttcaaggaagtattcctcca 12931351  T
Q  136 agcataggaaactgccaacatttacaatatctaaatcttgctcaaaataagcttagaggaatcatacccttagagatttttaatcttttttccttatcaa 235  Q
    |||||||||||||| ||| ||||||||| |||  ||||| |||| |||||||||||||||| ||||||  ||||| |||| ||||||||||| |||||||    
T  12931352 agcataggaaactgtcaaaatttacaatctcttgatctttctcataataagcttagaggaaccatacctgtagaggttttaaatcttttttctttatcaa 12931451  T
Q  236 t 236  Q
    |    
T  12931452 t 12931452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 36 - 236
Target Start/End: Original strand, 12898543 - 12898743
Alignment:
Q  36 aaacaagttgtcaggagatataccacactttataggcaatttcagccaattgtattggctggatttacatcataatatgtttgaaggaaatattcctcca 135  Q
    ||||||||||||||||||||| |||| ||| ||||||||| |||| || |||| |    |  | ||| |||||||||||||| |||||| ||||||||||    
T  12898543 aaacaagttgtcaggagatattccacccttcataggcaatctcagtcagttgtttaaattacaattaaatcataatatgtttcaaggaagtattcctcca 12898642  T
Q  136 agcataggaaactgccaacatttacaatatctaaatcttgctcaaaataagcttagaggaatcatacccttagagatttttaatcttttttccttatcaa 235  Q
    ||||| |||||||| | |||||||||||||||| ||||| |||| |||||||||||||||| ||||||   |||| |||| ||||||||||| |||||||    
T  12898643 agcattggaaactgtctacatttacaatatctagatctttctcataataagcttagaggaaccatacctgcagaggttttaaatcttttttctttatcaa 12898742  T
Q  236 t 236  Q
    |    
T  12898743 t 12898743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 36 - 232
Target Start/End: Original strand, 12957054 - 12957250
Alignment:
Q  36 aaacaagttgtcaggagatataccacactttataggcaatttcagccaattgtattggctggatttacatcataatatgtttgaaggaaatattcctcca 135  Q
    ||||||||||||||||||||| ||||  || ||||| ||| |||| ||||||| |    | || ||| ||||||| |||||| |||||| ||||||||||    
T  12957054 aaacaagttgtcaggagatattccaccgttcatagggaatctcagtcaattgtttaaattagaattagatcataacatgtttcaaggaagtattcctcca 12957153  T
Q  136 agcataggaaactgccaacatttacaatatctaaatcttgctcaaaataagcttagaggaatcatacccttagagatttttaatcttttttccttat 232  Q
    |||||||||||||| ||| ||||||||||||||||||||  ||| |||||||||||||||| ||||||  ||||| |||| ||| ||||||| ||||    
T  12957154 agcataggaaactgtcaaaatttacaatatctaaatctttatcataataagcttagaggaaccatacctgtagaggttttaaatattttttcattat 12957250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 12906128 - 12906363
Alignment:
Q  1 aagttccaaaagatgcaagatttaacattgaatagaaacaagttgtcaggagatataccacactttataggcaatttcagccaattgtattggctggatt 100  Q
    |||||||||||||||||   |||| | ||| || ||||||| ||||| |||| ||| |||| ||| ||||||||| |||| ||||||| |    | |  |    
T  12906128 aagttccaaaagatgcagcttttatctttggatggaaacaaattgtctggaggtattccacccttcataggcaatctcagtcaattgtttaaattagtat 12906227  T
Q  101 tacatcataatatgtttgaaggaaatattcctccaagcataggaaactgccaacatttacaatatctaaatcttgctcaaaataagcttagaggaatcat 200  Q
    || |||||||||||||| |||||| ||||||||||||| |||||||||| ||| |||||||||||||| ||||  |||| |||||||||||||||| |||    
T  12906228 tagatcataatatgtttcaaggaattattcctccaagcttaggaaactgtcaaaatttacaatatctagatctgtctcataataagcttagaggaaccat 12906327  T
Q  201 acccttagagatttttaatcttttttccttatcaat 236  Q
    |||  ||||| |||| ||||| ||||| ||||||||    
T  12906328 acctgtagaggttttaaatctgttttctttatcaat 12906363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 36 - 203
Target Start/End: Original strand, 12947617 - 12947784
Alignment:
Q  36 aaacaagttgtcaggagatataccacactttataggcaatttcagccaattgtattggctggatttacatcataatatgtttgaaggaaatattcctcca 135  Q
    ||||||||||||||||| ||| |||| ||| ||||||||| |||| ||||||| |    | || ||| |||||||||||||| |||||| ||||||||||    
T  12947617 aaacaagttgtcaggaggtattccacccttcataggcaatctcagtcaattgtttgatttagaattaaatcataatatgtttcaaggaagtattcctcca 12947716  T
Q  136 agcataggaaactgccaacatttacaatatctaaatcttgctcaaaataagcttagaggaatcatacc 203  Q
    |||||||||||||| ||| ||||||||| |||  ||||| |||| |||||||||||||||| ||||||    
T  12947717 agcataggaaactgtcaaaatttacaatctctttatctttctcataataagcttagaggaaccatacc 12947784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 36 - 236
Target Start/End: Complemental strand, 17924639 - 17924439
Alignment:
Q  36 aaacaagttgtcaggagatataccacactttataggcaatttcagccaattgtattggctggatttacatcataatatgtttgaaggaaatattcctcca 135  Q
    ||||||||||||||||||||| |||| ||| ||||||||| |||| |||||||||    | || ||| |||||||||||||| |||||| ||||||||||    
T  17924639 aaacaagttgtcaggagatattccacccttcataggcaatctcagtcaattgtatgatttagaattagatcataatatgtttcaaggaattattcctcca 17924540  T
Q  136 agcataggaaactgccaacatttacaatatctaaatcttgctcaaaataagcttagaggaatcatacccttagagatttttaatcttttttccttatcaa 235  Q
    ||| |||||||||| ||| |||||||||||||| ||||  |||| |||||||||||||||| ||||||  ||||| |||| ||||||||||| |||||||    
T  17924539 agcttaggaaactgtcaaaatttacaatatctagatctgtctcataataagcttagaggaaccatacctgtagaggttttaaatcttttttctttatcaa 17924440  T
Q  236 t 236  Q
    |    
T  17924439 t 17924439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 31468316 - 31468281
Alignment:
Q  118 gaaggaaatattcctccaagcataggaaactgccaa 153  Q
    |||||||||||||||| |||||||||||||||||||    
T  31468316 gaaggaaatattcctctaagcataggaaactgccaa 31468281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University