View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6177_low_12 (Length: 239)
Name: NF6177_low_12
Description: NF6177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6177_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 21706774 - 21706552
Alignment:
| Q |
1 |
aacaatatagtgttatctttgtcaagtttggaagaataacttccatttcatcaatagttctgtctccaccatcatgtttaaaaacctcttcaatttgatc |
100 |
Q |
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| T |
21706774 |
aacaatatagtcttatctctgtcaagtttggaagaataacttccatttcatcaatagttctgtctccaccatcatgtttaaaaacctcttcaatttgatc |
21706675 |
T |
|
| Q |
101 |
tgagtttcgtatttcaagacttcttaattttggaagcattttgctcatagaaacagggaaaaggcttttcaacttgttgcagcctccgactgctacagct |
200 |
Q |
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| T |
21706674 |
tgagtttcttatttcaagactgcttaattttggaagcattttcctcatagaaacagggaaaaggcttttcaacttgttgcagcctccgactactacatct |
21706575 |
T |
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| Q |
201 |
gttagctttggaaaatacacttc |
223 |
Q |
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| T |
21706574 |
gttagctttggaaaatacacttc |
21706552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 21712695 - 21712912
Alignment:
| Q |
12 |
gttatctttgtcaagtttggaagaataa------cttccatttcatcaatagttctgtctccaccatcatgtttaaaaacctcttcaatttgatctgagt |
105 |
Q |
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| T |
21712695 |
gttatctctgtcaagtttggaagaataagaacaacttccatttcatttacagttctgtctccaccgccatttctaaaaacctcttcaaattgagtagcgt |
21712794 |
T |
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| Q |
106 |
ttcgtatttcaagacttcttaattttggaagcattttgctcatagaaacagggaaaaggcttttcaacttgttgcagcctccgactgctacagctgttag |
205 |
Q |
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| T |
21712795 |
cgaaaatgtgaagagtgcttaattgcggaagcattttaaccatagcaacagggaaaaggcttttcaacttgttgcatcttttgacttctacatgtgctag |
21712894 |
T |
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| Q |
206 |
ctttggaaaatacacttc |
223 |
Q |
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| T |
21712895 |
ctttgggaaatagacttc |
21712912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 21709534 - 21709483
Alignment:
| Q |
123 |
cttaattttggaagcattttgctcatagaaacagggaaaaggcttttcaact |
174 |
Q |
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| T |
21709534 |
cttaattgtggaagcattttaatcatagtaacaaggaaaaggcttttcaact |
21709483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 21125507 - 21125479
Alignment:
| Q |
155 |
agggaaaaggcttttcaacttgttgcagc |
183 |
Q |
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| T |
21125507 |
agggaaaaggcttttcaacttgttgcagc |
21125479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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