View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6177_low_14 (Length: 238)
Name: NF6177_low_14
Description: NF6177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6177_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10981798 - 10981576
Alignment:
| Q |
1 |
gtgaagaaatctaagataacagctttgaggtttgtagttttggaaatagaatggagaatattctcaacatggttgttgctatgttgacaaacttcaaggg |
100 |
Q |
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| T |
10981798 |
gtgaagaaatctaagataacagctttgaggtttgtggttttggaaatagaatggagaatgttctcaacatggttgttgctatgttgacaaacttcaaggg |
10981699 |
T |
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| Q |
101 |
tgcataagagttgtggaagtgttgtagggaatgaaattggaggaatgtaatggaaattaattgagggaaatgtggtcgaaacattggctatgtattgttc |
200 |
Q |
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| T |
10981698 |
tgcataagagttgtggaagtgttgtagggaatgaaattggaggaatgtaatggaaattaattgagggaaatgtggtcgaaacattggctatgtattgttc |
10981599 |
T |
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| Q |
201 |
ttgtggagaaagggtgtctttgt |
223 |
Q |
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| T |
10981598 |
ttgtggagaaagggtgcctttgt |
10981576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11002031 - 11001809
Alignment:
| Q |
1 |
gtgaagaaatctaagataacagctttgaggtttgtagttttggaaatagaatggagaatattctcaacatggttgttgctatgttgacaaacttcaaggg |
100 |
Q |
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|||| |||||||||||||| | |||||| |||||| ||||||||||| || | |||||| || | |||||| | |||||| | || | |||||||| | |
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| T |
11002031 |
gtgaggaaatctaagataatacctttgaagtttgtggttttggaaatggagttgagaatgttgtgaacatgatggttgcttttgtgtgagacttcaagtg |
11001932 |
T |
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| Q |
101 |
tgcataagagttgtggaagtgttgtagggaatgaaattggaggaatgtaatggaaattaattgagggaaatgtggtcgaaacattggctatgtattgttc |
200 |
Q |
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| T |
11001931 |
taagtaagtgtgttggaagtgttgtagagaatgaaattggaggaatatagtggaaattaattgacggaaatgtggctgaaacattgacaatgtattgttc |
11001832 |
T |
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| Q |
201 |
ttgtggagaaagggtgtctttgt |
223 |
Q |
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|||||| |||||||||||||||| |
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| T |
11001831 |
ttgtggggaaagggtgtctttgt |
11001809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 10967869 - 10967650
Alignment:
| Q |
7 |
aaatctaagataacagctttgaggtttgtagttttggaaatagaatggagaatattctcaacatggttgttgctatgttgacaaacttcaagggtgcata |
106 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||| || ||||||||||| | ||||| ||| ||||| || ||| | | |||||||| || |
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| T |
10967869 |
aaatctaagataactcctttgaggtttgtggttttggaaatggattggagaatattgtgaacatagttattgctttggtgagagagctcaagggtaagta |
10967770 |
T |
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| Q |
107 |
agagttgtgg---aagtgttgtagggaatgaaattggaggaatgtaatggaaattaattgagggaaatgtggtcgaaacattggctatgtattgttcttg |
203 |
Q |
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| T |
10967769 |
aaggtggtggtggaagtgttgtggggggtgaaattagaggaatgtaatgaaaattgattgaagggaatgtggaagaaactgaggctatgtattgttcttg |
10967670 |
T |
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| Q |
204 |
tggagaaagggtgtctttgt |
223 |
Q |
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|||||||||||||| ||||| |
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| T |
10967669 |
tggagaaagggtgtttttgt |
10967650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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