View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6177_low_3 (Length: 401)
Name: NF6177_low_3
Description: NF6177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6177_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 32256907 - 32257281
Alignment:
| Q |
16 |
acctcaacccttctgtataacagatccagacttcttatagcatccttttcatcctgtaaataggtgattaatgtataaaacaagatggtcagagaaagag |
115 |
Q |
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| T |
32256907 |
acctcaacccttctgtataacagatccagacttcttatagcatccttttcatcctgtaaataggtgattaatgtataaaacaagatggtcagagaaagag |
32257006 |
T |
|
| Q |
116 |
gatgaaaaaa-tatacagactactttttgaaataaacacagaacaaattttaagattcaattatgttaatccctttcagattataataatcatatcatat |
214 |
Q |
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| T |
32257007 |
gatgaaaaaaatatacagactactttttgaaataaacacagaacaaattttaagattcaattatgttaatccctttcagattataataatcatatcatat |
32257106 |
T |
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| Q |
215 |
ccaatatagaag-ttacaaaaggagaaaacaaaatcacactttgctcaatacgtctatcataataaattatttggatcaattgacagcttgactacaaac |
313 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32257107 |
ccaatatagaaggttacaaaaggagaaaacaaaatcacactttgctcaatacgtctatcataataaattatttggatcaattgacagcttgactacaaac |
32257206 |
T |
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| Q |
314 |
tcggtgaaaataaatagttggcctgacatttgatgggtccaaaactgcaaaacatcaattatattatgttcatct |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32257207 |
tcggtgaaaataaatagttggcctgacatttgatgggtccaaaactgcaaaacatcaattatattatgttcatct |
32257281 |
T |
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