View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6177_low_5 (Length: 361)
Name: NF6177_low_5
Description: NF6177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6177_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 158 - 347
Target Start/End: Complemental strand, 42108456 - 42108267
Alignment:
| Q |
158 |
tatgtgaattagaaaacaatgataatgataacaccggtatgaaataattttatgaaattcacaagctatcaatgataagttaagtccaatataatttttc |
257 |
Q |
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| T |
42108456 |
tatgtgaattagaaaacaatgataatgataacaccggtatgaaataattttatgaaattcacaagctatccatgataagttaagtccaatataatttttc |
42108357 |
T |
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| Q |
258 |
actctattgacattttattgtttatgaaagttaaaatttgggattgnnnnnnngtcttttcctaattttaaggggtaaatattttcttgt |
347 |
Q |
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| T |
42108356 |
actctattgacattttattgtttatgaaagttaaaatttgggattgtttttttgtcttttcctaattctaaggggtaaatattttcttgt |
42108267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 42108605 - 42108520
Alignment:
| Q |
10 |
aagaatataggataggagtattcacgaaaaacattaacacacaagcaaatgcaaattaatttgaagtttttgatatacctcataagtgtt |
99 |
Q |
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| T |
42108605 |
aagaatataggataggagtattcacgaaaaacattaacacacaagcaaatgca----aatttgaagtttttgatatacttcataagtgtt |
42108520 |
T |
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