View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6177_low_6 (Length: 338)
Name: NF6177_low_6
Description: NF6177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6177_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 18)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 3 - 317
Target Start/End: Original strand, 3921868 - 3922179
Alignment:
| Q |
3 |
aaggaaaacaagaaaagggttgagttctggaattgcttgaacttggatgaaagttctctcataaatattgggttgaatctgaaaatcaatttgatgaagt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3921868 |
aaggaaaacaagaaaagggttgagttctggaattgcttcaacttggatgaactttctctgataaatattgggttgaatctgcaaatcaatttgatgaagt |
3921967 |
T |
|
| Q |
103 |
ttacacatcaacatttatcaacactggaacatgatgattatgttgaaagttatgttgattacaacaaagataactttgattctcatcaagcattgtatgt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
3921968 |
ttacacatcaacatttatcaacactggaacatgatgaatatgctgaaagttatgttgatt---acaaagataactttgattcttatcaagcagtgtatgt |
3922064 |
T |
|
| Q |
203 |
gtatcctggaagtagtgttccagagtggttggagtacaagacaacaaagaatgatatgattgttgatctctctcagcctcatctctcccctttgttgggc |
302 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| | ||| ||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
3922065 |
gtatcctggaagtagtgttccaaagtggttggagtacaagacaacaatggatggcatgattgttgatctctctccacttcatctctcccctttgttgggt |
3922164 |
T |
|
| Q |
303 |
tttgttttttgcttt |
317 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3922165 |
tttgttttttgcttt |
3922179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 3 - 319
Target Start/End: Complemental strand, 4023366 - 4023056
Alignment:
| Q |
3 |
aaggaaaacaagaaaagggttgagttctggaattgcttgaacttggatgaaagttctctcataaatattgggttgaatctgaaaatcaatttgatgaagt |
102 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
4023366 |
aaggaaaacaagaaaaggattgagttctggaattgctggaacttggatgaacattctctcataaatattgggttgaatctgcaaatgaatttgataaagt |
4023267 |
T |
|
| Q |
103 |
ttacacatcaacatttatcaacactggaacatgatgattatgttgaaagttatgttgattacaacaaagataactttgattctcatcaagcattgtatgt |
202 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |
|
|
| T |
4023266 |
ttacatatcaacatttatcgacactggaacatgatcac---gttgaaagttatgttgattacaa---agataactttgattcttatcaagcagtgtatgt |
4023173 |
T |
|
| Q |
203 |
gtatcctggaagtagtgttccagagtggttggagtacaagacaacaaagaatgatatgattgttgatctctctcagcctcatctctcccctttgttgggc |
302 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| | | |||||||||||||| ||||| |
|
|
| T |
4023172 |
ttatcctggaagtagtattccagagtggttggagtacaagacaacaaaggatgacatgattgttgatctctctccacattatctctcccctttgctgggc |
4023073 |
T |
|
| Q |
303 |
tttgttttttgctttgt |
319 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4023072 |
tttgttttttgctttgt |
4023056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 3985292 - 3984983
Alignment:
| Q |
1 |
taaaggaaaacaagaaaagggttgagttctggaattgcttgaacttggatgaaagttctctcataaatattgggttgaatctgaaaatcaatttgatgaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
3985292 |
taaaggaaaacaagaaaaggattgagttctggaattgcttcaaattggatgaacgttctctcataaatattgggttgaatcttcaaatcaatttgatgga |
3985193 |
T |
|
| Q |
101 |
gtttacacatcaacatttatcaacactggaacatgatgattatgttgaaagttatgttgattacaacaaagataactttgattctcatcaagcattgtat |
200 |
Q |
| |
|
|||| || ||||||||||||| ||||||||||||||| | |||||||| |||||||||||||| ||||| | |||||||| |||||||| ||||| |
|
|
| T |
3985192 |
gtttgcatatcaacatttatcgacactggaacatgataaa---gttgaaagctatgttgattacaa---agatatccttgattcttatcaagcagtgtat |
3985099 |
T |
|
| Q |
201 |
gtgtatcctggaagtagtgttccagagtggttggagtacaagacaacaaagaatgatatgattgttgatctctctcagcctcatctctcccctttgttgg |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
3985098 |
gtatatcctggaagtagtgttccagagtggttggagtacaagacaacaaagaatgatatgattgttgatctctcaccacctcatctctcccctttgttgg |
3984999 |
T |
|
| Q |
301 |
gctttgttttttgctt |
316 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
3984998 |
gctttgttttctgctt |
3984983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 317
Target Start/End: Original strand, 3935216 - 3935539
Alignment:
| Q |
3 |
aaggaaaacaagaaaagggttgagttctggaattgcttgaacttggatgaaagttctctcataaatattgggttgaatctgaaaatcaatttgatgaagt |
102 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3935216 |
aaggaaaacaagaaagaagttaagttctggaattgcttgaacttggatgagcgttctctgataaatattgggttgaatctgcaaatcaatttgatgaagt |
3935315 |
T |
|
| Q |
103 |
ttacacatcaacatttatcaacactggaacatgatgattatgttgaaagttatgttgattacaacaaagataactttgattctcatcaagcattgtatgt |
202 |
Q |
| |
|
|| || ||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3935316 |
ttgcatatcaagatttatcaacagtggaacatgatgattatgttgaaacttatgttgatt---acaaagataactttgattcttatcaagcattgtatgt |
3935412 |
T |
|
| Q |
203 |
gtatcctggaagtagtgttccagagtggttggagtacaagacaacaaa-ga-----------atgatatgattgttgatctctctcagcctcatctctcc |
290 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||||||||||||||||| || |||| ||||||||||||||||||| | |||||||||| |
|
|
| T |
3935413 |
gtattctggaagtagtgttccagattggtttgagtacaagacaacaaacgagacaacaaacgatgacatgattgttgatctctctccacttcatctctcc |
3935512 |
T |
|
| Q |
291 |
cctttgttgggctttgttttttgcttt |
317 |
Q |
| |
|
||||||||||| ||||||||||||||| |
|
|
| T |
3935513 |
cctttgttgggttttgttttttgcttt |
3935539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 3 - 245
Target Start/End: Complemental strand, 4000450 - 4000211
Alignment:
| Q |
3 |
aaggaaaacaagaaaagggttgagttctggaattgcttgaacttggatgaaagttctctcataaatattgggttgaatctgaaaatcaatttgatgaagt |
102 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| ||| ||||||||||| | || |||| |
|
|
| T |
4000450 |
aaggaaaacaagaaaaggattgagttctggaattgcttcaacttggatgaacattctctcgtaaatattgggttcaatatgaaaatcaatctaatcaagt |
4000351 |
T |
|
| Q |
103 |
ttacacatcaacatttatcaacactggaacatgatgattatgttgaaagttatgttgattacaacaaagataactttgattctcatcaagcattgtatgt |
202 |
Q |
| |
|
|| || |||||||||||| |||||||||||||||||||||||||| ||||||| ||||| || || ||||| | |||| |||||||||||||||| |
|
|
| T |
4000350 |
ttgcatatcaacatttattgacactggaacatgatgattatgttgacagttatgctgatt---acgaatataaccattcttcttatcaagcattgtatgt |
4000254 |
T |
|
| Q |
203 |
gtatcctggaagtagtgttccagagtggttggagtacaagaca |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4000253 |
atatcctggaagtagtgttccagagtggttggagtacaagaca |
4000211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 316
Target Start/End: Complemental strand, 4008208 - 4007901
Alignment:
| Q |
3 |
aaggaaaacaagaaaagggttgagttctggaattgcttgaacttggatgaaagttctctcataaatattgggttgaatctgaaaatcaatttgatgaagt |
102 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| |||||| ||||| || ||||||| |||||||||| ||||||| | |||||||| | ||||||| |
|
|
| T |
4008208 |
aaggaaaacaagaaaagggttctgttatggaattgtttgaacctggataaacgttctcttataaatattgagttgaatattcaaatcaatataatgaagt |
4008109 |
T |
|
| Q |
103 |
ttacacatcaacatttatcaacactggaacatgatgattatgttgaaagttatgttgattacaacaaagataactttgattctcatcaagcattgtatgt |
202 |
Q |
| |
|
|| || ||||||||||||| |||||||||||| | |||||||||||| ||||||||||||| || | |||| |||| |||||||||| ||||| |
|
|
| T |
4008108 |
ttgcatatcaacatttatcgacactggaacataac---tatgttgaaagtaatgttgattacaaacaa---acgtttggttcttatcaagcattttatgt |
4008015 |
T |
|
| Q |
203 |
gtatcctggaagtagtgttccagagtggttggagtacaagacaacaaagaatgatatgattgttgatctctctcagcctcatctctcccctttgttgggc |
302 |
Q |
| |
|
|||||| ||||||| ||||| |||||||||| |||||| |||||| || ||||||||||||||||||||| || ||||||| |||||||||||||| |
|
|
| T |
4008014 |
gtatccaggaagtaccgttcctgagtggttggcgtacaaaacaacacaggatgatatgattgttgatctctttccaaatcatctcccccctttgttgggc |
4007915 |
T |
|
| Q |
303 |
tttgttttttgctt |
316 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4007914 |
tttgttttttgctt |
4007901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 3 - 315
Target Start/End: Original strand, 3957323 - 3957636
Alignment:
| Q |
3 |
aaggaaaacaa-gaaaagggttgagttctggaattgcttgaacttggatgaaagttctctcataaatattgggttgaatctgaaaatcaatttgatgaag |
101 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
3957323 |
aaggaaaacaaagaaaaggattgagttctggaattgcttgaacttggatgaatgctctctcataaatattgggttgaatgtgcagatcaatttgatgaag |
3957422 |
T |
|
| Q |
102 |
tttacacatcaacatttatcaacactggaacatgatgatta---tgttgaaagttatgttgattacaacaaagataactttgattctcatcaagcattgt |
198 |
Q |
| |
|
||| || ||| ||||| | | ||||| |||| ||| | | |||||| ||| ||||| |||||||||| ||||||||| |||||||| ||| |
|
|
| T |
3957423 |
tttgcatatcgacattcagcggcactgttacatcatgctaaaagcaatgaaagcaatgctgatt---acaaagataaatttgattcttatcaagcagtgt |
3957519 |
T |
|
| Q |
199 |
atgtgtatcctggaagtagtgttccagagtggttggagtacaagacaacaaagaatgatatgattgttgatctctctcagcctcatctctcccctttgtt |
298 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||| |||| || || ||||||||||| |||||||||||| | |||||||||||||| |
|
|
| T |
3957520 |
atttgtatcctggaagtagtgttccagagtggttcaagtacaggacagcacaggatgatatgattattgatctctctccttttttcctctcccctttgtt |
3957619 |
T |
|
| Q |
299 |
gggctttgttttttgct |
315 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3957620 |
gggctttgttttttgct |
3957636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 3815800 - 3815653
Alignment:
| Q |
173 |
taactttgattctcatcaagcattgtatgtgtatcctggaagtagtgttccagagtggttggagtacaagacaacaaagaatgatatgattgttgatctc |
272 |
Q |
| |
|
|||||||| |||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
3815800 |
taactttggttctgatgaagcaatgtatgtgtatcctggaagtagtattccagagtggttggagtacaagacaacaaaggatgatatgattattgatctc |
3815701 |
T |
|
| Q |
273 |
tctcagcctcatctctcccctttgttgggctttgttttttgctttgtt |
320 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||||| |||||| ||||| |
|
|
| T |
3815700 |
tctcagcctcgtctctcacctttattgggctttgtcttttgcattgtt |
3815653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 173 - 320
Target Start/End: Complemental strand, 3808226 - 3808079
Alignment:
| Q |
173 |
taactttgattctcatcaagcattgtatgtgtatcctggaagtagtgttccagagtggttggagtacaagacaacaaagaatgatatgattgttgatctc |
272 |
Q |
| |
|
|||||||| |||| || ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||| | ||||||||||||| |
|
|
| T |
3808226 |
taactttggttctgatgaagcaatgtatgtgtatcctggaagtaatgttccagagtggtttgagtacaagacaacaaaggatgacaagattgttgatctc |
3808127 |
T |
|
| Q |
273 |
tctcagcctcatctctcccctttgttgggctttgttttttgctttgtt |
320 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3808126 |
tctccacctcacctctcccccttgttgggctttgttttttgctttgtt |
3808079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 3800162 - 3799923
Alignment:
| Q |
1 |
taaaggaaaacaagaaaagggttgagttctggaattgcttgaacttggatgaaagttctctcataaatattgggttgaatctgaaaatcaatttgatgaa |
100 |
Q |
| |
|
|||||||||||||||||| | || | || ||||||||||||||||| || ||| |||||||||| ||| | |||||||||| | || ||||||||||| |
|
|
| T |
3800162 |
taaaggaaaacaagaaaatgattaacttttggaattgcttgaactttgaagaactttctctcatacataattggttgaatctacagattaatttgatgaa |
3800063 |
T |
|
| Q |
101 |
gtttacacatcaacatttatcaacactggaacatgatgattatgttgaaagttatgttgattacaacaaagataactttgattctcatcaagcattgtat |
200 |
Q |
| |
|
|||| || ||||||||||||| |||||||||| || | |||| |||||||||||||| |||||| |||||| |||| |||||||| |||| |
|
|
| T |
3800062 |
gtttgcatatcaacatttatcgacactggaac---ataagtatgctgaaagttatgttg--------aaagattactttgcttcttatcaagcaccgtat |
3799974 |
T |
|
| Q |
201 |
gtgtatcctggaagtagtgttccagagtggttggagtacaagacaacaaag |
251 |
Q |
| |
|
|| ||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3799973 |
gtttattctggaagtagtgttccatagtggttggagtacaagacaacaaag |
3799923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 276
Target Start/End: Complemental strand, 3999181 - 3998936
Alignment:
| Q |
25 |
agttctggaattgcttgaacttggatgaaagttctctcataaatattgggttgaatctgaaaatcaatttgatgaagtttacacatcaacatttatcaac |
124 |
Q |
| |
|
|||| |||||||| |||||| ||||| || |||||| ||||||| ||| ||||||| | |||||||| | || |||||| || ||||||||| || || |
|
|
| T |
3999181 |
agttatggaattgtttgaacctggataaacgttctcacataaatgttgagttgaatattcaaatcaatataataaagtttgcatatcaacattattcgac |
3999082 |
T |
|
| Q |
125 |
actggaacatgatgattatgttgaaagttatgttgattacaacaaagataactttgattctcatcaagcattgtatgtgtatcctggaagtagtgttcca |
224 |
Q |
| |
|
| |||||||| | |||||||||||| ||||||||||||| | |||| |||| |||| |||||||||||||||| ||||| ||||| |||||| || |
|
|
| T |
3999081 |
attggaacataac---tatgttgaaagtaatgttgattacaa---acataagtttggttcttatcaagcattgtatgtttatccaggaagcagtgtttca |
3998988 |
T |
|
| Q |
225 |
gagtggttggagtacaagacaacaaagaatgatatgattgttgatctctctc |
276 |
Q |
| |
|
|||| |||||||||||| ||||||||| |||| | |||| ||||| |||||| |
|
|
| T |
3998987 |
gagtcgttggagtacaaaacaacaaaggatgacaggattattgatatctctc |
3998936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 3815904 - 3815805
Alignment:
| Q |
3 |
aaggaaaacaagaaaagggttgagttctggaattgcttgaacttggatgaaagttctctcataaatattgggttgaatctgaaaatcaatttgatgaagt |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||| ||||||| |
|
|
| T |
3815904 |
aaggaaaacaagaaaagtgttgagttctggaattgcgagaacttggatgaaagttctctcataaatgttgggttgaatgttcaaatcaatttaatgaagt |
3815805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 3808330 - 3808231
Alignment:
| Q |
3 |
aaggaaaacaagaaaagggttgagttctggaattgcttgaacttggatgaaagttctctcataaatattgggttgaatctgaaaatcaatttgatgaagt |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||| ||||||| |
|
|
| T |
3808330 |
aaggaaaacaagaaaagtgttgagttctggcattgcaagaacttggatgaaagttctctcataaatgttgggttgaatgttcaaatcaatttaatgaagt |
3808231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 4000202 - 4000101
Alignment:
| Q |
218 |
tgttccagagtggttggagtacaagacaacaaagaatgatatgattgttgatctctctcagcctcatctctcccctttgttgggctttgttttttgcttt |
317 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || |||| ||||||||| || |||||| | |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4000202 |
tgttcgagagtggttggagtacaagacaacagaggatgacatgattgttaatatctctccacttcatctctcctctttgttgggctttgttttttgcttt |
4000103 |
T |
|
| Q |
318 |
gt |
319 |
Q |
| |
|
|| |
|
|
| T |
4000102 |
gt |
4000101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 182 - 312
Target Start/End: Complemental strand, 4216939 - 4216817
Alignment:
| Q |
182 |
ttctcatcaagcattgtatgtgtatcctggaagtagtgttccagagtggttggagtacaagacaacaaagaatgatatgattgttgatctctctcagcct |
281 |
Q |
| |
|
|||| |||||||| |||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| || | ||| |
|
|
| T |
4216939 |
ttcttatcaagcaccgtatgtttattctggaagtagtgttccatagtggttggagtacaagacaacaaag--------gattgttgatctttccccacct |
4216848 |
T |
|
| Q |
282 |
catctctcccctttgttgggctttgtttttt |
312 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| |
|
|
| T |
4216847 |
catctctgccctttgttgggcttagtttttt |
4216817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 3936852 - 3936950
Alignment:
| Q |
1 |
taaaggaaaacaagaaaagggttgagttctggaattgcttgaacttggatgaaagttctctcataaatattgggttgaatctgaaaatcaatttgatgaa |
100 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| ||||||| | || |||||||||||||||||||||||||| | |||||||||| ||||| |
|
|
| T |
3936852 |
taaaggaaaacaa-aaaagagttgagttctggaattgctggaacttgattaaatgttctctcataaatattgggttgaatgttcaaatcaatttaatgaa |
3936950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 4217135 - 4216997
Alignment:
| Q |
1 |
taaaggaaaacaagaaaagggttgagttctggaattgcttgaa-----cttggatgaaagttctctcataaatattgggttgaatctgaaaatcaatttg |
95 |
Q |
| |
|
|||||||||||||||||| | || | || |||||||||||||| ||| || ||| |||||||||| ||||| |||||||||| | || |||| | |
|
|
| T |
4217135 |
taaaggaaaacaagaaaatgattaacttttggaattgcttgaattgaactttgaagaactttctctcatacatatttggttgaatctacagattaattag |
4217036 |
T |
|
| Q |
96 |
atgaagtttacacatcaacatttatcaacactggaacat |
134 |
Q |
| |
|
|||| |||| || ||||||||||||| |||||||||||| |
|
|
| T |
4217035 |
atgatgtttgcatatcaacatttatcgacactggaacat |
4216997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 4016476 - 4016406
Alignment:
| Q |
179 |
tgattctcatcaagcattgtatgtgtatcctggaagtagtgttccagagtggttggagtacaagacaacaa |
249 |
Q |
| |
|
|||||||||||||||| | ||||||||||| || || |||||||||| ||||| || || |||||||||| |
|
|
| T |
4016476 |
tgattctcatcaagcactttatgtgtatccagggagctgtgttccagattggtttgaatataagacaacaa |
4016406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 13396136 - 13396080
Alignment:
| Q |
3 |
aaggaaaacaagaaaagggttgagttctggaattgcttgaacttggatgaaagttct |
59 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
13396136 |
aaggaaaacaagaaaaggatagagttttggaattgcttgaacttggatgaacgttct |
13396080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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