View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6177_low_7 (Length: 321)
Name: NF6177_low_7
Description: NF6177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6177_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 14437800 - 14437503
Alignment:
| Q |
18 |
acttttcttacctataacttaaatgtaaaattatttttataaacatccataaatgtatgatctaaaagtctcataagaaggcaaccaaataaggctcctg |
117 |
Q |
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| T |
14437800 |
acttttcttacctataacttaaatgtaaaattatttttataaacatccataaatgtatgatctaaaagtctcataagaaggcaaccaaataaggctcctg |
14437701 |
T |
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| Q |
118 |
tatatgacaaacacgtatagaataagaaaaatt---------aaatatcattttcggaaaacaaacaaataaggctggccaatccatatttataagttag |
208 |
Q |
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| T |
14437700 |
tatatgacaaacacgtatagaataagaaaaattcaatatattaaatatcattttcggaaaacaaacaaataaggctggccaatccatatttataagttag |
14437601 |
T |
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| Q |
209 |
tagtctagaggtactatattttttctgttacccttattttcataactttactttattaatcatatcattcaatttctaacatctttcaccgtcctttg |
306 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14437600 |
cagtctagaagtactatattttttctgttacccttattttcataactttactttattaatcatatcattcaatttctaacatctttcaccgtcctttg |
14437503 |
T |
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